Arabidopsis lyrata (lyrate rockcress): 9305132
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Entry
9305132 CDS
T01578
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03020
RNA polymerase
aly03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
9305132
09124 Replication and repair
03420 Nucleotide excision repair
9305132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aly03021
]
9305132
03400 DNA repair and recombination proteins [BR:
aly03400
]
9305132
Enzymes [BR:
aly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
9305132
Transcription machinery [BR:
aly03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
9305132
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
9305132
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
9305132
NCBI-ProteinID:
XP_020873010
LinkDB
All DBs
Position
Unknown
AA seq
1838 aa
AA seq
DB search
MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDIRLGTI
DRKVKCETCMANMAECPGHFGHLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHK
FKQAMKIKNPKNRLKKILDACKNKTKCEGGDDIDDVQNQDTDEPVKKSRGGCGAQQPKLT
IEGMKMIAEYKIPRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDEDCQLLGFNPKFA
RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII
SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYII
RDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYS
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD
TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI
NLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDA
ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQEKK
LDPEPGRTMTETFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM
TACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
KLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRF
QLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVV
PGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAP
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL
TPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDED
VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRI
MNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDEEGGFK
TSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETD
CLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPVSGT
PYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPTSPGYSP
TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSIAYS
PSNARLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYSPSAGY
SPTLPGYSPSSTGQYTPHEGEKNAKTGKDVSKDDKSNP
NT seq
5517 nt
NT seq
+upstream
nt +downstream
nt
atggatacgaggtttccgttctcaccggccgaggtctctaaagtccgggtggtccagttt
ggcatactcagccccgatgagatcaggcaaatgtctgttatacatgttgagcatagtgag
acgaccgagaagggtaaacctaaagttggaggattgagtgatatccggcttggtacgatt
gatcggaaggtgaagtgtgagacatgtatggctaatatggccgagtgtccgggacatttt
ggccatcttgagctcgctaagccaatgtatcatgttggttttatgaagacggtgttaagt
atcatgagatgtgtctgcttcaattgctccaagattttagctgatgaggaggagcacaag
tttaaacaggctatgaagataaagaaccccaagaataggcttaagaagattctggatgcc
tgtaaaaacaagaccaaatgtgaaggtggtgatgatattgatgatgtccagaaccaagac
actgacgaaccagtaaaaaagagccgaggtggatgtggtgcacaacaaccaaagctgact
attgagggtatgaagatgattgcagaatacaaaattccaaggaagaaaaacgatgagcca
gaccagcttccggagcctgcagaaaggaaacagacacttggtgctgatagggttttgagt
gttttgaagaggattagtgatgaggattgtcaactcctagggttcaaccctaagtttgct
cgtcctgactggatgattcttgaagtccttcctatccctccaccccctgtcagaccatct
gtaatgatggatgccacttccagaagtgaggatgacttgacccatcagctagccatgatt
attcgacacaatgaaaacttgaaaaggcaggaaaaaaatggagcgccagctcatattata
tcagagtttacacaactcttgcagtttcatatagctacgtattttgataacgagttgcct
ggacagccaagggctactcagaaatcagggaggcctattaaatcaatatgtagtaggctg
aaggccaaggaaggcagaatcaggggtaacttgatgggaaaacgagttgatttctcggca
cgtaccgttattacaccagatccaacaataaatattgatgaacttggtgttccgtggagt
attgccctgaatctcacatacccagaaacagttactccctataacattgaaagattaaaa
gagctcgttgattatggaccacatcctccacctggcaagactggagcaaaatatatcata
agggacgatggccaaagactagatcttcggtaccttaagaagagcagtgatcaacatttg
gaacttggatacaaagtggagcggcatttacaggatggtgattttgttctatttaatcgt
caaccaagtctgcacaaaatgtctatcatgggtcacaggattaggattatgccatattcc
actttccgtctgaatttgtctgtcacgtctccgtacaatgctgattttgatggggatgag
atgaacatgcatgtaccacagtcattcgagaccagagccgaggtgttagagctgatgatg
gttcctaaatgtattgtctccccccaggcgaatcggcctgtgatgggaattgtgcaggat
accctcctagggtgccgtaaaatcacaaagagagataccttcatagagaaggatgtattc
atgaatacactaatgtggtgggaagacttcgacgggaaagttccggctcctgcaattttg
aagcctcgtcctctttggactggcaaacaagtttttaatcttatcataccaaaacagata
aatctgttgaggtattctgcttggcacgcagatacagagactggattcataactccgggg
gatactcaagtgcgaattgaaagaggggaacttcttgccggaactctttgcaaaaagacc
cttggtacatctaatggaagtctcgtgcatgtcatttgggaagaggttggtcctgatgca
gcaaggaaattcctcggccatactcaatggcttgtcaattactggcttctgcagaatggt
tttaccatcggaattggtgacacaattgccgattcatcaacaatggagaaaattaatgaa
actatttccaatgcaaaaactgctgtgaaagatcttatccggcagttccaggaaaagaaa
ttggaccctgagcctggccgaactatgactgagacatttgagaacagggttaaccaggtt
ttgaataaagctcgtgatgatgctggaagtagtgctcaaaagagtttagcagaaaccaat
aaccttaaggccatggtgacagcaggatccaaaggaagtttcatcaatatttctcaaatg
acagcgtgtgtcggtcagcaaaatgttgaagggaagcgaattccctttggatttgatggg
cggacattgccacatttcaccaaagatgattatggtcctgaaagtcgtggttttgttgag
aattcatacctgcgtgggttgactcctcaagagttctttttccatgccatgggaggaaga
gaaggtcttattgatactgctgtgaagacatcagaaactggatacattcagaggcgattg
gtaaaggctatggaggatattatggttaagtatgatgggacagtcagaaactctttgggt
gatgttattcagtttctctatggagaagatggtatggatgctgtatggatagaatcacag
aagctggattccttgaaaatgaagaaatcagagtttgataggacttttaagtatgagatt
gacgacgaaaactggaatcctacatacctaagtgatgaacatctcgaggacttgaagggg
attcgggagttgcgtgatgtatttgatgcagaatattcgaaacttgagactgacagattc
caactcgggacagaaattgcaacaaatggtgatagcacttggccattgcctgttaacatc
aagaggcatatctggaatgcgcagaagactttcaaaattgacttgcgcaaaatttcggat
atgcaccctgttgaaattgttgatgctgttgataaactacaggagaggctgctggttgtt
cctggtgatgatgcgttgagtgtggaagcacagaaaaacgcaacattgttctttaacatt
ttgcttcgcagcactcttgctagtaaaagagttttggaagaatacaagcttagccgcgag
gcttttgagtgggtcattggtgagatcgaatcgaggtttttacaatctttagtggcccct
ggggaaatgatcggttgtgttgctgcgcaatcaattggagaacctgctacgcagatgact
ctgaacaccttccattatgctggtgttagtgcaaagaacgttacacttggagttcccagg
ttgcgtgaaattattaatgtagctaagaggatcaaaacaccatccctatcagtctatctc
actccggaagctagcaaatcaaaagagggggctaagactgttcagtgtgctttggagtat
actactctcaggagtgtcactcaagctacggaagtctggtatgacccagatccaatgagt
actataattgaagaggactttgaatttgtgaggtcctactatgagatgccagatgaagat
gtttctcccgataaaatatctccttggctacttcgtatagagctgaatcgtgagatgatg
gttgataagaaattgagtatggcggatattgcggagaagattaaccttgagttcgatgat
gacctaacttgtatattcaatgatgataatgctcaaaaactgatccttcgaattcgcatt
atgaacgatgagggcccaaagggagagttgcaagatgagtcggctgaggatgatgttttc
cttaaaaagattgagagcaacatgctgacagaaatggctctcagaggtattccagacatc
aacaaggtttttattaaacaggttaggaaaagcaggtttgatgaggagggaggtttcaag
acatctgaggagtggatgttggatacagaaggtgttaatctcttagctgttatgtgccac
gaagatgtggatccaaagagaacaacaagcaatcacttgattgaaattattgaagttctc
ggaattgaggcagttcgtcgtgctttgttggatgaactccgtgttgtgatatcctttgat
ggttcttatgtgaattaccgtcatcttgccatcttgtgtgatactatgacctatcgcggt
catctgatggctatcactcgacatggtatcaatagaaatgacactgggcctctgatgaga
tgctcttttgaagaaacagttgatattctgctagatgctgcggcttatgctgagacagac
tgcttaaggggtgttactgagaatataatgttgggtcaacttgcaccaattgggacagga
gattgtgaattgtatctgaatgatgagatgctgaagaatgcaattgaacttcagctccct
agctatatggatggtctggaatttggaatgactcctgctcgttcaccagtgtcaggcact
ccttaccatgaaggcatgatgtctccaaactacctgttaagtccaaatatgcgtttgtcg
ccaatgtcagatgcacagttttctccatatgttggtggaatggccttttcgccttcttct
tctccaggctatagcccatcatcccctggatacagtcctacttctcccggttacagtccc
acttcacctggatatagcccgacttctcccggttatagtccaacttcgcctacctacagt
cccagttctcctggctatagcccaacaagccctgcttattctcctacaagtccttcctat
tctcctacctctccgagctacagcccaacatctccaagctatagccctacgtcgccaagc
tacagcccgacatctccgagctacagccctacgtccccaagttacagcccgacttcgcct
gcttacagcccgacttcacctgcatatagcccaacttcaccagcatacagcccaacctct
ccttcttacagcccaacttcaccatcttacagcccaacatcgccttcttacagccctact
tcaccatcttacagtcccacatcaccgtcttatagtcctacttcacccgcatatagcccc
acatctcctggctacagccctacttcaccaagttacagtccaacatcaccaagctacggt
cctacgtctccaagctacaaccctcagtctgccaaatacagcccatctatagcttactct
cctagcaatgcaagactatcaccagctagcccctacagtcctacatctccaaactacagc
ccgacatcaccatcatactcacccacatctccatcttattcaccttcaagtccaacatac
agtcccagcagtccgtacagctcaggagcaagccctgactacagcccaagcgcaggctac
tcaccgacacttcccggttattcaccgtcatctacgggtcagtatacaccacatgagggc
gagaaaaatgccaagactggaaaagatgtcagtaaggatgataaaagcaacccttga
DBGET
integrated database retrieval system
