Arabidopsis lyrata (lyrate rockcress): 9306214
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Entry
9306214 CDS
T01578
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 28
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
9306214
03009 Ribosome biogenesis [BR:
aly03009
]
9306214
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
9306214
Spliceosome [BR:
aly03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
9306214
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
Pre-60S particles
Helicases
9306214
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ARTD15_N
Motif
Other DBs
NCBI-GeneID:
9306214
NCBI-ProteinID:
XP_002868110
UniProt:
D7MCD6
LinkDB
All DBs
Position
Unknown
AA seq
790 aa
AA seq
DB search
MPSGFFFEDASDDELELLRNQEDSSEEDVEEDEAEEHKSGEDEDGEDNEEDDEEEEEEED
EKRKRDADAQSPWDFASYSSSVGEEHARRHTTSIDEKISKAIQHRPVPISIEEEEEEEEE
EEEEEDASDAEPDKQEEYLSEDDGAAEYKPEDFTPKPFFSTVDGVSFHADSFMELNLSRP
LLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVF
ATRVLILTPTRELAVQIHSMIQKLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPG
RMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEE
VKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLCTRTFKSKVII
FSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLD
IIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGSKLKS
RVIPEQSIVKWSHIIDEMEDQYSAVISAERDERALRKAEMEFAKAENMLEHRDEIYARPK
RTWFMTEKEKKLVAQAEKDSAGNPSGGELVSADRAEDFKMKEKRKREREKNLPRKKRRKL
EAAREMLEDNEGEEAEEEGDEKRGKSRGKDKKKQETEKKGLTLKDLGYMRAKAVKAKQRA
IDSGKMERPTPNKKPNRSKPRNQPRDEEMKDLFKSDMSEKKQGRGGAAAAAKPRTKSKNS
FKSKARYKRR
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgggtttcttctttgaggatgctagtgacgacgagctcgaattactacgcaat
caagaggatagtagtgaggaagatgtagaggaagacgaagcagaagagcataaatctgga
gaagacgaagatggagaagataacgaagaagatgacgaagaagaagaagaagaagaagat
gagaagcggaaacgtgatgctgatgctcaatctccttgggattttgcatcttattctagc
tccgttggtgaagaacacgcccgccgtcacacaacgtctattgatgaaaagatctctaaa
gctattcagcatcgtccagttcccatttcaatagaggaagaagaggaagaagaagaagaa
gaagaagaagaagaagatgcctccgatgctgaacctgacaaacaagaggagtatctttcg
gaagacgatggagcagctgagtacaaaccagaagattttactccgaagccgtttttctct
acagttgatggagtttcatttcatgctgattctttcatggagcttaatctctctcgtcca
ttgcttcgagcttgtgaaaccctcggatacaagaaacctactccgattcaggcagcgtgt
atacctttagcacttacagggcgtgatctttgtgccagtgccatcactggatcagggaag
actgctgctttcgctttacctactcttgagaggttgctgttccgtcccaagcgggtcttt
gctactagagttcttattctcactccgaccagggagttggctgtccagattcacagtatg
attcagaagcttgcacaatttactgatatcaagtgtggattgattgtaggagggctttct
gtaagggagcaagaggtggttctgaggtctatgccagatattgttgtggcgactcctggg
cgtatgatagatcatttgcgtaattctatgtctgttgatttggatgatctagcggtttta
atcctcgatgaggcagaccgccttctacagactgggtttgccactgaaataacagagctg
gttcgcttatgtcccaagagaaggcagacaatgctcttctcagccacaatgactgaagaa
gtcaaagagttagtcaaactttccttgaacaaaccgttgcggctctcagctgatccatca
gctagaaggccaccaggcttgacggaggaggtggtaagaatacgcaggactcgtgaggct
aatcaggaagctgttcttctatcgttgtgcacaagaacttttaaatcaaaagtcattatc
tttagtggaacaaaacaagctgcacatagactgaaaattttattcggattagctggcctc
aaagcagctgagcttcatggaaacctaactcaagcgcaacgtcttgattctttggaactt
ttcagaaagcaagaggttgattttctcattgctactgatgtagctgctcgaggacttgac
atcattggtgttcaaacagttataaattatgcttgtcctcgggaaatagacagttatgtt
cacagagttggtagaacagctagggctggaagggaaggttatgctgttacgtttgtgact
gatagtgaccgatcccttttgaaagttattgcaaagaaggtgggttcaaagttgaagagc
cgagtcatcccagagcagtcgatcgtcaagtggtctcatataatcgatgaaatggaagat
cagtattccgctgttatttcagcagagagggatgagcgagctctaaggaaagctgaaatg
gaatttgcaaaggcggagaacatgcttgagcacagggatgaaatatatgcacgcccaaaa
agaacttggttcatgacagagaaagagaagaagctcgtggcacaggctgaaaaggattct
gcagggaacccttctggaggcgaactagttagtgctgatagagcagaggatttcaagatg
aaggagaagagaaaacgtgaacgcgagaagaatctgcctaggaaaaaacgtagaaagcta
gaagctgccagagagatgctagaagataacgaaggcgaagaagccgaagaagaaggagac
gaaaagcgaggaaaatcaagagggaaagacaagaaaaaacaagagacagagaagaaggga
ttgacactaaaggatcttggttacatgagagcaaaagcggtgaaagcaaaacagagagca
attgattctggtaagatggagagaccaacgccgaacaagaaaccaaaccggagtaaacca
agaaatcagcctcgagatgaagagatgaaagatctgttcaagagtgatatgagcgagaag
aaacagggcagaggcggtgccgcggctgcagcaaaacctaggacgaagtcgaagaactcg
ttcaagagcaaagcccgatataagcgtaggtaa
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integrated database retrieval system
