Arabidopsis lyrata (lyrate rockcress): 9309113
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Entry
9309113 CDS
T01578
Name
(RefSeq) ribonuclease II, chloroplastic/mitochondrial
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aly03016
]
9309113
Enzymes [BR:
aly01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
9309113
Transfer RNA biogenesis [BR:
aly03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
9309113
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-GeneID:
9309113
NCBI-ProteinID:
XP_002870965
UniProt:
D7M7A0
LinkDB
All DBs
Position
Unknown
AA seq
803 aa
AA seq
DB search
MISVRAINGCSIIRTATSAGGPPVSLFRHRIQRLRASHLREFSKLGLNFPLLRSNRRSLG
NNDAPSCSSCIHSLVESVSEELGSISRRKGSRIRVRASVKVKLTSYGEVLEDKLVNQELE
AGLLLEFKKDAERVLLAVVHRRDGKKNWMVFDQNGVTCSIKPQQITYIVPGVYNFDHTGL
TDFLQRAQDNLDPQLLEFAWIELLEKNKPVTPEELAEMIYGRADPLESYCAHFLLSQDEI
YFFVLESKGSRSIYSPRSSEQVEELLRRQRVKEAEEKEFQEFIQLLKSAKKSPSHAKPPK
SSWLADDKVQDRIGSLEAYAIDAWASTDQQKSAGTILKSMGLQKTSVSALNLLIDIGYFP
VHVNLELLKLNLPTHHSEAITEAAEVLLSESSDIDAVRRIDLTHLKVYAIDVDEADELDD
ALSATRLQDGRIKIWIHVADPARYVTPGSKVDREARRRGTSVFLPTATYPMFPEKLAMEG
MSLRQGENCNAVSVSVVLRSDGCIADYSVENSIIRPTYMLTYESASELLHLNLEEEAELK
LLSEAAFIRSQWRREQGAVDTTTLETRIKVVNPEDPEPLINLYVENQADLAMRLVFEMMI
LCGEVVATFGSQHNIPLPYRGQPQSNIDVSAFAHLPEGPVRSSSIVKVMRAAEMNFRCPV
RHGVLGIPGYVQFTSPIRRYMDLTAHYQIKAFLRGGDNFPFSAGELEGIAASVNMQSKVV
RKLSNSGLRYWVIEFLRRQEKGKKYTALILRFVKDRIASLLLVEVGFQATAWVSEGKQVG
DEIEVRVEEAHPRDDLILFKEVI
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgatttcggttagagcaatcaatggttgctccatcattcggaccgccacttccgccggc
ggccctcccgtctctctatttcgccaccgtattcagcgccttagagcttctcatctccgt
gaattctcgaaattaggtttaaattttccactactccggtcgaataggcgatctctcgga
aataatgatgctccgagctgttcgtcttgcattcatagtctggtcgaaagtgtttccgaa
gagctcggatccatcagcagacgcaagggaagccgaatccgagttcgtgctagcgtgaag
gtgaaattaacaagctacggagaggttctggaggataagctagtaaaccaggaactggag
gcgggtttgcttctggagtttaagaaggacgcagagagagtattgttggcagttgttcat
agacgtgatggcaagaagaactggatggtctttgatcagaatggtgttacttgttccatc
aaaccacagcaaattacgtacatcgtcccaggtgtttataattttgatcatacaggactt
actgattttctccagagggcacaggataacttggatccccaactgcttgagtttgcttgg
atcgagttacttgagaagaacaaacctgtgacaccagaagagttagcagagatgatatat
ggtcgcgcagatcctcttgaaagctattgtgctcattttttgctatcacaagacgagata
tacttttttgtcttggagtcaaaaggttctcgatcaatatatagccctcggtctagtgaa
caggtggaagagcttttacgaaggcaacgcgtgaaggaggcagaagagaaagagtttcag
gagtttattcaattgctgaagtctgccaagaagtcgcctagtcacgccaaaccacccaaa
tcttcatggctagctgatgataaagtccaagatagaattggctcacttgaagcttatgcc
attgatgcatgggcaagcactgaccagcagaaatcggctggaacgatcttaaaatccatg
gggttacagaaaacgtctgtatcagcactaaaccttctcatagatattggatattttcct
gtacatgtcaatcttgaactgcttaagctgaatcttcctacccaccactcagaagctatc
actgaagctgctgaagttcttctttcagaatcatctgatattgatgcggttaggaggatt
gatctaacacacttgaaggtttatgcaattgatgttgatgaggctgatgagcttgatgat
gccctcagtgcaacgagactgcaggatggacggataaagatctggatacatgttgctgat
cctgctagatatgttacacccgggagtaaagtggacagagaggcaaggagaaggggaact
tctgtctttctgcctacggctacttatccaatgtttccagaaaaacttgccatggaagga
atgagtttaagacaaggagaaaactgcaatgctgtctctgtgtctgttgtcctgcgttct
gatggctgtattgcagactattcagtagagaattcaatcatcagaccaacctatatgttg
acatatgaaagtgcttctgagctgcttcacttgaacctagaagaagaagctgaactgaaa
ttgctatctgaggcagctttcattcgctctcaatggcgccgtgaacagggtgcagtggac
acaactacgctagaaactcgtataaaagtggtgaatcctgaggatccagaacctttgata
aatctctatgtagaaaatcaggcagatctagcgatgagacttgtctttgaaatgatgatt
ctttgtggggaggttgtagcaacgtttgggtctcagcataatattccattgccatataga
ggacagcctcagtcaaatattgatgtatctgcatttgcgcatcttccggaaggacccgta
cggtcgtcatccattgtcaaagtaatgcgtgctgcagaaatgaatttcagatgtcctgtt
cgacatggagtgcttggaattcctggttacgttcagttcacatctcccattcgtcgttac
atggatcttactgcacattatcagattaaggcttttcttcgaggaggtgacaattttcca
ttttcggctggtgagttagaaggtatagcagcatccgtaaacatgcagagcaaagtggtg
agaaaactctcaaacagcggtctccgctattgggtaatagagtttctcagaagacaagaa
aagggtaaaaaatacaccgcattgatcttgagatttgtcaaagaccggatcgcatccctt
ttgttggttgaggtgggttttcaagcaacggcgtgggtgtcagaaggaaaacaagtggga
gatgaaattgaagttcgagtagaagaagctcatccccgcgacgatcttattctcttcaaa
gaggttatatag
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integrated database retrieval system
