Arabidopsis lyrata (lyrate rockcress): 9313420
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Entry
9313420 CDS
T01578
Name
(RefSeq) histone deacetylase 9
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03082
ATP-dependent chromatin remodeling
aly03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
9313420
03083 Polycomb repressive complex
9313420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aly03036
]
9313420
Enzymes [BR:
aly01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
9313420
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
9313420
HDAC complexes
Sin3A-HDAC complex
9313420
BRAF-HDAC complex
9313420
REST complex
9313420
SHIP complex
9313420
MiDAC complex
9313420
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
9313420
Heterochromatin formation proteins
Other heterochromatin formation proteins
9313420
Chromatin remodeling factors
NuRD complex
9313420
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
9313420
NCBI-ProteinID:
XP_020880269
LinkDB
All DBs
Position
Unknown
AA seq
426 aa
AA seq
DB search
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLILAYGLHSKMEVYRPHKAYPIEM
AQFHSPDYVEFLQRINPENQNLFPNEMARYNLGEDCPVFEDLFEFCQIYAGGTIDAARRL
NNKLCDIAINWAGGLHHAKKCDASGFCYINDLVLGILELLKHHPRVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKFGDKFFPGTGDVKEIGEREGKFYAINVPLKDGIDDSSFNRLFRT
IISKVVEIYQPGAIVLQCGADSLARDRLGCFNLSIDGHAECVKFVKKFNLPLLVTGGGGY
TKENVARCWTVETGILLDTELPNEIPENDYIKYFAPDFSLKIPGGHIENLNTKSYISSIK
VQILENLRYIQHAPSVQMQEVPPDFYIPDFDEDEQNPDVRVDQRSRDKQVQRDDEYFDGD
NDNDAS
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgcgctccaaggacaaaatctcctacttttatgatggggatgtggggagcgtgtatttt
ggtccgaatcacccgatgaaacctcacaggctttgtatgactcatcatcttatccttgca
tatggcctccatagcaagatggaagtttatcgtccacacaaggcatatcctattgagatg
gctcagttccattctcccgactatgtagagttcctgcaacgaattaatccagaaaatcag
aacttgtttcccaatgaaatggctagatataatctgggagaggattgtcctgtgtttgaa
gatctgtttgaattttgtcaaatttacgctggcgggaccatagatgctgcacgcagatta
aacaacaaactctgtgacattgctataaattgggcgggcgggctgcaccatgccaaaaaa
tgtgatgcatctgggttttgttacatcaacgatcttgtactaggaattcttgagttgtta
aaacaccatccccgtgtgctatacatagatatagatgttcatcacggtgatggagttgaa
gaagctttttacttcactgacagagtaatgactgttagctttcataagtttggggataag
ttctttccagggacaggcgatgttaaggaaataggagaaagagaagggaaattttacgcc
attaatgtgccgctgaaggatggaattgatgacagtagtttcaaccgtctgttcaggaca
ataatttccaaggttgttgagatatatcaaccgggtgcaattgttcttcaatgtggggca
gattcactagccagggatcgactaggatgctttaatctctctattgatggacatgctgaa
tgtgttaaatttgtgaaaaagttcaatcttcccttactggttacaggaggtggaggatac
acaaaggagaatgtagctcggtgttggaccgttgagactggcattcttttggacacagaa
cttcctaatgagattcctgaaaatgactacatcaagtattttgcgccggatttttctttg
aagataccaggtggtcacattgagaatctgaataccaaatcatacatcagttcgatcaaa
gtgcagattttggagaacttgcgatacattcaacacgctccaagcgtacagatgcaggag
gttccaccggatttctacataccggattttgatgaagatgaacaaaacccggatgtacgt
gtggatcagcgttcgcgagataagcaggtccaaagagacgatgaatatttcgatggggac
aatgataacgatgcttcgtaa
DBGET
integrated database retrieval system