KEGG   Arabidopsis lyrata (lyrate rockcress): 9313420
Entry
9313420           CDS       T01578                                 
Name
(RefSeq) histone deacetylase 9
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03082  ATP-dependent chromatin remodeling
aly03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    9313420
   03083 Polycomb repressive complex
    9313420
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:aly03036]
    9313420
Enzymes [BR:aly01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     9313420
Chromosome and associated proteins [BR:aly03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     9313420
   HDAC complexes
    Sin3A-HDAC complex
     9313420
    BRAF-HDAC complex
     9313420
    REST complex
     9313420
    SHIP complex
     9313420
    MiDAC complex
     9313420
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     9313420
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    9313420
  Chromatin remodeling factors
   NuRD complex
    9313420
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 9313420
NCBI-ProteinID: XP_020880269
LinkDB
Position
Unknown
AA seq 426 aa
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLILAYGLHSKMEVYRPHKAYPIEM
AQFHSPDYVEFLQRINPENQNLFPNEMARYNLGEDCPVFEDLFEFCQIYAGGTIDAARRL
NNKLCDIAINWAGGLHHAKKCDASGFCYINDLVLGILELLKHHPRVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKFGDKFFPGTGDVKEIGEREGKFYAINVPLKDGIDDSSFNRLFRT
IISKVVEIYQPGAIVLQCGADSLARDRLGCFNLSIDGHAECVKFVKKFNLPLLVTGGGGY
TKENVARCWTVETGILLDTELPNEIPENDYIKYFAPDFSLKIPGGHIENLNTKSYISSIK
VQILENLRYIQHAPSVQMQEVPPDFYIPDFDEDEQNPDVRVDQRSRDKQVQRDDEYFDGD
NDNDAS
NT seq 1281 nt   +upstreamnt  +downstreamnt
atgcgctccaaggacaaaatctcctacttttatgatggggatgtggggagcgtgtatttt
ggtccgaatcacccgatgaaacctcacaggctttgtatgactcatcatcttatccttgca
tatggcctccatagcaagatggaagtttatcgtccacacaaggcatatcctattgagatg
gctcagttccattctcccgactatgtagagttcctgcaacgaattaatccagaaaatcag
aacttgtttcccaatgaaatggctagatataatctgggagaggattgtcctgtgtttgaa
gatctgtttgaattttgtcaaatttacgctggcgggaccatagatgctgcacgcagatta
aacaacaaactctgtgacattgctataaattgggcgggcgggctgcaccatgccaaaaaa
tgtgatgcatctgggttttgttacatcaacgatcttgtactaggaattcttgagttgtta
aaacaccatccccgtgtgctatacatagatatagatgttcatcacggtgatggagttgaa
gaagctttttacttcactgacagagtaatgactgttagctttcataagtttggggataag
ttctttccagggacaggcgatgttaaggaaataggagaaagagaagggaaattttacgcc
attaatgtgccgctgaaggatggaattgatgacagtagtttcaaccgtctgttcaggaca
ataatttccaaggttgttgagatatatcaaccgggtgcaattgttcttcaatgtggggca
gattcactagccagggatcgactaggatgctttaatctctctattgatggacatgctgaa
tgtgttaaatttgtgaaaaagttcaatcttcccttactggttacaggaggtggaggatac
acaaaggagaatgtagctcggtgttggaccgttgagactggcattcttttggacacagaa
cttcctaatgagattcctgaaaatgactacatcaagtattttgcgccggatttttctttg
aagataccaggtggtcacattgagaatctgaataccaaatcatacatcagttcgatcaaa
gtgcagattttggagaacttgcgatacattcaacacgctccaagcgtacagatgcaggag
gttccaccggatttctacataccggattttgatgaagatgaacaaaacccggatgtacgt
gtggatcagcgttcgcgagataagcaggtccaaagagacgatgaatatttcgatggggac
aatgataacgatgcttcgtaa

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