Arabidopsis lyrata (lyrate rockcress): 9319146
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Entry
9319146 CDS
T01578
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 20, chloroplastic
KO
K05391
cyclic nucleotide gated channel, plant
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
9319146
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
aly04040
]
9319146
Ion channels [BR:
aly04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
9319146
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
DUF6525
Motif
Other DBs
NCBI-GeneID:
9319146
NCBI-ProteinID:
XP_002883080
UniProt:
D7L7B8
LinkDB
All DBs
Position
Unknown
AA seq
767 aa
AA seq
DB search
MASHNENDDIPMLPISDPSSRTRARAFTSRSRSVSLSNPTSSIEGFDNSTVVLGYTGPLR
TQRRPPLVQMSGPLTSTRKPEPLFLPHPSSGSSDSVGVSSQPERYPSFAALEHKKSSDDE
FVLKHANLLRSGQLGMCNDPYCTTCPSYYNRKAAQIPTSRVSALFDSTFHNALYDDAKGW
ARRFASSVNRYLPGIMNPHAKEVQTWTKFFALSCLLAIFIDPLFFFLIKVQEQNKCIMID
WPMTKAFVAVRSVTDVIFTMNILLQFRLAYVARESTVVGAGQLVSHPKKIALHYFRGKFF
LDLFIVMPLPQILILWIIPKHLGASGANYAKNLLRAAVLFQYIPKLYRLLPFLAGQTPTG
FIFESAWANFVINLLTFMLAGHVVGSCWYLFGLQRVNQCLRNACGNFERECQDLIDCGNG
NSTVLVRATWRDNASANACFQEDGFPYGIYLKAVNLTNHSSLFTRYSYSLFWGFQQISTL
AGNQVPSYFLGEVFFTMGIIGLGLLLFALLIGNMQNFLQALGKRNLEMTLRRRDVEQWMS
HRRLPDGIRKRVREAERFNWAATRGVNEELLFENMPEDLQRDIRRHLFKFLKKVRIFSLM
DEPILDAIRERLKQRTYIGSSTVLHRGGLVEKMVFIVRGEMESIGEDGSVLPLYEGDVCG
EELLTWCLERSSVNPDGTRIRMPSKGLLSNRNVRCVTNVEAFSLSVADLEDVTSLFSRFL
RSHRVQGAIRYDSPYWRLRAARQIQVAWRYRRRRLQRLCTPQSSYSL
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccacaacgaaaacgatgatattcccatgcttccaatttcagacccatcatct
cgtactagagccagagctttcacttccaggagtcgtagcgtttctctctcaaaccctact
tcctccattgaaggatttgacaattccactgtggttttaggctacacgggtcctcttcga
actcagagacgtcctcctttagttcaaatgagtggtcctcttacctctactcgcaaacct
gaacctctctttcttcctcatccttcttctggttcttctgattccgttggtgtctcttct
cagcctgagaggtatccttcttttgctgctcttgaacataaaaaatcctcagacgatgag
ttcgttttgaaacacgcaaatctcttgaggtctggacaattagggatgtgtaatgatcct
tactgtactacttgcccttcttactacaaccgtaaagctgctcaaatccctacttctaga
gtttctgccctttttgattccacgttccataatgctctgtatgatgatgctaaaggttgg
gcaaggagatttgcttcctctgttaatagatacttacctggaatcatgaatcctcatgcc
aaagaggttcaaacctggactaaattcttcgccctttcatgcttgttagctatttttata
gatcctctcttcttcttcctcataaaagtccaagagcaaaacaaatgcattatgattgat
tggccgatgactaaagcatttgtagctgttagaagtgtaacagatgttatattcactatg
aacattctacttcagttccgattggcctacgtagctcgtgagtctacggtagttggtgct
ggccagttagttagtcatcccaaaaaaattgcccttcattactttagaggaaagtttttc
cttgacttgttcatagtgatgccacttccacagatattgattttatggataataccaaaa
catttgggtgcatccggggcaaactatgcgaaaaaccttctacgagctgcagttcttttc
caatacattccgaagttatatagacttctaccatttcttgctggacaaacacctaccgga
ttcatatttgagtcagcttgggctaattttgttattaatcttctcactttcatgcttgct
ggacatgttgttggctcttgctggtaccttttcggtctgcagagagttaatcaatgcctt
cgaaatgcttgcggtaattttgagcgtgaatgtcaagatcttatagattgtggtaatgga
aatagcactgtgttagtacgagcaacctggagagataatgcgagtgccaacgcttgtttc
caagaagatggttttccttatggaatctatttaaaagcagtcaatctaaccaatcattct
agtctcttcacaagatacagttactctctcttctggggttttcagcaaataagcactctt
gctggaaaccaagtcccaagctactttctaggggaggtcttctttactatgggtatcatt
ggactagggcttttgctttttgcgcttcttattggtaatatgcaaaatttccttcaagct
cttggtaaaaggaatttggaaatgacgctaagacggcgtgatgtggagcaatggatgagc
catagacggttgccagatggtataagaaagagggtgcgagaggcagagcggttcaactgg
gctgctactagaggcgttaacgaagaattgctgtttgagaacatgcctgaagatctccaa
agagatataagacgacacctctttaaatttctcaagaaggtgagaatattttcgttgatg
gatgaaccaatcttagatgcaatccgtgagaggctgaaacagaggacatacatagggagt
agcacagtgttgcaccgcggaggtctagttgagaaaatggtattcatagtgagaggtgag
atggagagcattggagaagacggttctgttcttcctttatatgaaggcgatgtttgtggt
gaagaactcctcacttggtgcctcgaacgctcttctgtaaaccccgatgggacgaggata
aggatgccatcaaagggattgcttagcaacagaaatgttaggtgtgtgacaaatgtggag
gcattttcgctgagtgtggcagatcttgaagacgtaacaagcttgttctcgagattcttg
aggagtcatagagtccaaggagccataaggtacgactctccatattggaggctacgagct
gctaggcagattcaagtggcgtggagatatcgtaggagacggcttcagagattatgtact
cctcagtctagttacagcctttag
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