Arabidopsis lyrata (lyrate rockcress): 9323339
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Entry
9323339 CDS
T01578
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH15 chloroplastic
KO
K26077
ATP-dependent RNA helicase ISE2 [EC:
5.6.2.6
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
9323339
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
9323339
Spliceosome [BR:
aly03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
9323339
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
Helicase_C
IstB_IS21
AAA_22
Cytomega_UL84
Motif
Other DBs
NCBI-GeneID:
9323339
NCBI-ProteinID:
XP_002888753
UniProt:
D7KXX4
LinkDB
All DBs
Position
Unknown
AA seq
1178 aa
AA seq
DB search
MNTLPVVSLTPCSSFFKFFHFPSLHLSLSHSPNFCFTKSLILNPNQLSFKSSLNSLSPSQ
SQLSEEYEEDDDDEEEEEEEEEDEDDDDDEAADEYENISDEIGNSDDDEETEFSVDLPTE
ESARERVEFRWQRVEKLRSLVRDFGVEMIDIDELISIYDFRIDKFQRLAIEAFLRGSSVV
VSAPTSSGKTLIAEAAAVATVAKGRRLFYTTPLKALSNQKFREFRETFGDDNVGLLTGDS
AINKDAQIVIMTTEILRNMLYQSVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEETV
IYCPKEVQLICLSATVANPDELAGWIGEIHGKTELVTSTRRPVPLTWFFSTKHSLLPLLD
EKGTNVNRKLSLNYLQLSASEARFRDDDDGYRKRRSKKRVGDTSYNSLVNITDYPLSKNE
INKIRRSQVPQISDTLWHLQGKDMLPAIWFIFNRRGCDAAVQYVENFQLLDDCEKSEVEL
ALKKFRVLYPDAVRESAEKGLLRGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAA
GINMPARTAVISSLTKKAGNERIQLGPNELFQMAGRAGRRGIDEKGYTVLVQTAFEGAEE
CCKLVFAGVKPLVSQFTASYGMVLNLVAGSKVTRKSSGTEAGKVLQAGRSLEEAKKLVEK
SFGNYVSSNVTVAAKEELAEIDKKIEILSSEISDEAIDKKSRKLLSARDYKEITELKEEL
REEKRKRAEVRRRMELARFSALKPLLKGMEEGNLPFICLEFKDSEERQQSVPAIYLGHID
SFQGSKLQKMMSLDESFALNVIEDEPAADEPGKPNVKPSYYVALGSDNSWYLFTEKWVRT
VYRTGFPNISLALGDALPREIMKTLLDKADMQWDKLAESELGSLWRLEGSLETWSWSLNV
PVLSSLSDEDEVLHMSEEYDNATEQYKEQRRKVFRLKKKMSRSAGFREYKKILENANLTV
EKMKRLKARSRRLINRLEQIEPSGWKDFMRISNVIHESRALDINTHLIFPLGETAAAIRG
ENELWLAMVLRNKALVDLKPPELAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMVNFL
EDQRISLIKLQEKHEVMIPCCLDVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLLRRT
IDLLAQIPKLPDIDPVLQRSAAAAADIMDRPPISELAG
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgaacactcttcccgtcgtctctctcacaccttgttcttccttcttcaaattcttccat
tttccttctctgcacctttctctctctcattccccaaacttctgtttcaccaaatcccta
atcctcaatccaaaccaactctccttcaaatcctccttaaattctctctcaccgtcgcag
tctcagctctccgaggagtacgaggaagacgacgacgacgaagaagaagaagaagaagaa
gaagaagacgaagatgacgatgacgacgaagctgcagacgaatacgagaatatatccgat
gaaattggtaatagcgacgacgatgaagaaaccgagttctcggtggatttaccaacggag
gaatcagctcgggaacgagtcgagttccggtggcagagagttgagaagcttcgtagtctt
gttcgagattttggtgttgagatgattgatatcgatgaactcatttccatctacgatttt
cgaatcgacaagtttcagagattggctattgaagcttttcttagaggttcttctgttgtg
gtttctgctccaacgagtagtgggaagactttgattgctgaagcagctgctgttgctacg
gtggctaaaggtcgtcggttgttctatactacaccgcttaaagcactctctaatcagaag
tttcgtgagtttagggagacatttggcgacgataatgttggtctactcacaggtgactct
gctatcaataaggatgctcagattgtgatcatgactacagagattcttcggaatatgttg
tatcaaagtgttggaatggcttcttcagggactggactttttcatgttgatgctattgtt
ttggatgaggttcattatttgagtgacatttctaggggaactgtgtgggaggagactgtc
atttattgcccaaaggaggttcaacttatatgcttatcagctacagttgcaaatccagat
gaattagctggttggattggtgagatacacggtaaaactgagttggtaacatctacaaga
cgcccagttccattaacttggttcttctcaacaaaacattctttattacctctgcttgat
gagaaagggacaaatgttaataggaagctgtctctcaattatttgcaactgtctgcctca
gaagctagattccgtgatgatgatgacgggtacaggaaaaggaggtcaaaaaagagagta
ggtgataccagctacaacagccttgtgaacattactgattatcctctttcaaagaatgag
ataaacaagattcgccgatcacaggtacctcaaattagcgacacattatggcatctccag
gggaaagatatgttaccagctatatggttcattttcaaccgtagaggatgtgatgcagct
gtacagtatgttgaaaactttcagcttttagatgattgcgagaagagtgaggttgagttg
gcattgaagaagtttcgcgttctttatccagatgcagtgagagagagtgcagagaaagga
ctgcttaggggaattgctgctcatcatgcaggttgtctacctctttggaaatctttcatt
gaggaactgtttcagcgaggacttgttaaggttgtctttgctactgagacacttgctgct
ggaataaacatgccggctagaacggctgttatctcgtctctaacaaaaaaggctggtaat
gaacgaatacagttgggtcctaacgaattgttccagatggctggacgtgctggacgcaga
ggcattgatgaaaagggctacactgtgctggttcagactgcttttgaaggtgccgaagag
tgctgcaaacttgtctttgctggagttaaacctctcgtgtcacaatttactgcttcatat
ggcatggtactgaatctggtagctggttcaaaagttactcgtaaatcaagtggaactgag
gccgggaaagtcttacaagcagggagaagtctggaagaagccaagaaattagttgagaag
agttttggaaactatgtgagcagcaatgtgacggttgctgcgaaggaggaacttgctgaa
atcgacaagaagatcgagattctgtcatctgaaataagcgatgaagcaatagataagaag
agtaggaaacttctatcagcgagggactacaaggagatcactgaacttaaagaagagcta
cgggaagagaaacgcaagcgtgctgaagtacgaagaagaatggaactcgcaaggttctca
gctctaaaaccgctcttaaaagggatggaagaggggaacttaccatttatttgtttggag
ttcaaggattctgaagagaggcagcagtcagtccctgctatttacttgggacatattgat
tcatttcagggttccaaacttcagaagatgatgtctttggatgagtcgtttgcattaaac
gtaatcgaggatgagccggcggctgatgaacctggaaagcctaatgttaaaccgtcttac
tatgtggcccttggctctgataactcatggtatctctttactgagaagtgggttaggact
gtctacagaactggttttcctaacatttctctagcgcttggagatgctttgcctcgagaa
atcatgaaaactctcctggataaagcagatatgcagtgggataaactagctgaatctgaa
cttggaagtttgtggagattggaaggatctctagagacatggtcctggagtttaaacgta
cctgtcctaagcagcctttctgacgaagatgaggtgttacatatgtccgaagagtatgat
aacgcgacggaacaatacaaggaacaaaggagaaaagtgtttcgtttgaagaagaagatg
tcccggtcagcagggttcagagaatataagaaaattctagagaatgctaacttgacggtt
gagaagatgaaacggctcaaggcaagatcgagacgtcttataaaccgtttggagcagatc
gaaccgtctggttggaaagatttcatgcgcataagcaacgtgattcacgaaagcagagca
ttggacattaacacacacttgatatttcctctgggagaaaccgctgctgcaattcgagga
gaaaacgagctttggcttgcaatggtgctgcggaacaaagccctggtggatctcaagcct
cctgaactagctggtgtatgtgcaagtttagtttcggaaggcataaaagttcgaccttgg
agagacaacaactatatatacgagccatctgataccgtagtagacatggttaatttctta
gaagaccaaagaatctctcttataaagcttcaagagaagcacgaggttatgattccatgt
tgtttggacgttcagttctctggtatggttgaagcttgggcttctggattaagttggaaa
gaaatgatgatggaatgtgcaatggacgaaggcgatcttgctcgtctgttacgacgcaca
attgatctcttagctcagattcctaagttgcctgatattgacccggtcctgcaacgtagt
gcagcagctgcagcagatatcatggaccgtccaccaatcagtgagcttgccggttaa
DBGET
integrated database retrieval system
