Arabidopsis lyrata (lyrate rockcress): 9326238
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Entry
9326238 CDS
T01578
Name
(RefSeq) serine/arginine-rich splicing factor SR45 isoform X1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03013
Nucleocytoplasmic transport
aly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
9326238
03015 mRNA surveillance pathway
9326238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9326238
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
9326238
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
9326238
NCBI-ProteinID:
XP_020866908
LinkDB
All DBs
Position
Unknown
AA seq
418 aa
AA seq
DB search
MAKPSRGRRSPSVSGSSSRSSSRSRSRSGSSPSRSLSRSRSRSRSRSLSSSSSPSRSVSS
GSRSPPPRGKSPAGPARRGRSPPPPPPQSKRASSPSKKAVQESLVLYVDSLSRNVNEGHL
KEIFGNFGEVIHVEIAIDRSVNLPKGHAYVEFKARADAEKAQLFMDGGQIDGKVVKATFT
LPPRQKVSSPPKPVSTAPKRDAPKSDNAGADTEKDGPRRPRETSPQRKTGLSPRRRSPLP
RRGLSPRRFPDSPHRRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRNRSPPRGSPR
RIRGSPVRRRSPPPMRRRSPPPRRLRSPPRRSPIRRRSRSPIRRPGRSRSRSISPRRGRG
PAGRRGRSSSYSSSPSPRRIPRKISRSRSPRRPLRGKRSSSNSSSSSSPPPPPPPRKT
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaccaagtcgtggccgtcgttccccttccgtgtctggctcatcatctcgttcc
agttccagatctcgttcccgctccggttctagtccctccaggtctctttcccgctcccgc
tcccgctcccggtctagatcgctctcttcatcctcatctccttcccggagcgtcagttct
gggagtcgcagtcctcctcctcgtggaaagagtcctgctggacctgctaggcgaggtcgc
tctcctcctcctcctcctccacaatctaaaagagcatcttcaccttctaagaaagctgtt
caagaatctcttgttctttatgttgattctcttagcaggaatgtgaatgaaggccatctc
aaagaaatatttggcaactttggtgaagttatacacgtcgaaattgccatagatcgatct
gttaatcttccaaaaggacatgcttatgttgagttcaaggcaagagctgatgctgagaaa
gcacagctgttcatggatggtggccaaattgatggaaaggttgttaaagcaacgttcaca
ctaccacctcgtcagaaagtatcttcaccgcctaaacctgtctcaactgcaccaaaaaga
gatgctcctaaatctgataatgctggtgctgacactgaaaaagatgggcccaggcgccca
agagagacatctcctcaacggaaaacaggactttctccgagaaggcgatcacctctacct
aggagaggcttatcacctaggagatttcctgattctccccatcgccggaggccgggctct
cctatccgtcgtcgcggtgatacaccgcccaggcgcaggccagcatcaccatctagaggc
cgttctccatcttctccgcctccaagacgaaatagatctcctccaaggggatcccctaga
agaatccgtggcagtcctgttcgaagacggtctcctcctcctatgagacgaaggtctcca
cctccaaggagactacgcagtccacccagaagatctccaatccgcaggcgtagccgatcc
ccaattcgtaggcctggtcgctctcgttcaaggtccatctcaccccgcaggggacgaggt
ccagctgggagacgtgggaggtcatcttcttactctagttcgccaagtcccagaaggatt
cctaggaagatttcaaggagccgcagtcctaggaggccactgagaggaaaaagaagcagc
agtaacagcagcagcagcagttcaccgccaccaccacctccacctcgcaaaacttaa
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