Arabidopsis lyrata (lyrate rockcress): 9326934
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Entry
9326934 CDS
T01578
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
9326934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aly03021
]
9326934
03019 Messenger RNA biogenesis [BR:
aly03019
]
9326934
Transcription machinery [BR:
aly03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
9326934
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
9326934
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
Torus
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
9326934
NCBI-ProteinID:
XP_002893618
UniProt:
D7KEU5
LinkDB
All DBs
Position
Unknown
AA seq
631 aa
AA seq
DB search
MEDADGLSFDFEGGLDSGPAQPSASVPVAPPDNSSSAAVNVAPTYDHSSATVAGAGRGRS
FRQTVCRHWLRGLCMKGDACGFLHQYDKARMPICRFFRLYGECREQDCVYKHTNEDIKEC
NMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLTSYNYGPNRFYQPRNVAPQLQD
KPQGQVLTQGQPQEAGNLQQQQQQQPQQSQHQVSQTQIPNPADQTNRTSHPLPQGVNRYF
VVKSCNRENFELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSR
IGSYIGGGNWKHEHGTAQYGRNFSVKWLKLCELSFHKTRNLRNPYNENLPVKISRDCQEL
EPSVGEQLASLLYLEPDSDLMAISIAAEAKREEEKAKGVNPESRAENPDIVPFEDNEEEE
EEEDESEEEEESMAGGPQGRGRGRGMMWPPQMPLGRGIRPMPGMGGFPLGVMGPGDAFPY
GPGGYNGMPDPFGMGPRPFGPYGPRFGGDFRGPVPGMMFPGRPPQQFPHGGYGMMGGGRG
PHMGGMGNAPRGGRPMYYPPATSSARPGPTNRKTPERSDERGVGADQQNQDTSHDMEQFE
VGNSLRNEESESEDEDEAPRRSRHGEGKKRR
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgctgatggactcagcttcgatttcgaaggcggtctcgattccggacctgct
cagccctccgcttcagtcccggttgctccgcctgataactcttcctccgccgctgttaac
gtagcaccgacctacgatcactcctccgcgacggtggctggagctggcaggggaagaagt
ttccggcagactgtttgcagacactggcttcgaggtctgtgtatgaaaggtgacgcctgt
gggtttctccaccagtatgacaaagctcgtatgccaatctgccgatttttccggttatac
ggtgaatgtcgagagcaggattgtgtgtataaacataccaatgaagatatcaaagaatgc
aatatgtacaagctgggattttgtcccaatggtcctgattgtcggtacaggcatgcaaag
cttcctggacctccaccacctgttgaggaagttcttcagaagatacaacaattgacatca
tacaattatgggccaaataggttctatcaaccacggaatgttgctccacagctacaagat
aaacctcaggggcaagttctgacgcaaggccagccacaagaagcaggtaacttgcagcag
caacaacaacaacaacctcagcagtcacaacaccaggtcagccagactcagataccaaat
cctgctgatcaaacaaacagaacatctcatcctttgcctcaaggggtaaataggtatttt
gtagttaagagttgcaatcgagaaaattttgaattatctgtgcaacaaggagtatgggct
acgcaaaggagcaatgaatctaaacttaatgaagctttcgactctgtggaaaatgtgatc
ttgatattttctgtcaacaggacccggcatttccagggctgtgctaagatgacatcaaga
attggtagttacattggtggaggaaactggaaacatgaacacggaactgcacagtatggc
cggaacttttcagttaaatggttaaagttgtgcgaactatccttccacaaaactcggaat
ttgaggaatccctacaacgaaaacttacctgtgaagataagcagagactgtcaggagtta
gagccctccgtcggtgaacagcttgcttctttgctttatcttgaaccagatagcgatctt
atggcaatctccatagctgcagaagcgaaacgagaagaagaaaaagcgaagggtgtgaat
ccagagagcagagctgagaacccagacattgtgccgtttgaagacaacgaagaagaggaa
gaggaagaagatgaaagtgaggaggaagaagagagcatggcgggcggtcctcaaggcaga
ggaaggggaagaggaatgatgtggccgcctcaaatgcctctaggacgcggaatcagacca
atgcctggaatgggaggtttcccgcttggggtaatgggccctggcgatgcatttccctat
gggcctggtggatataacggtatgccagatccatttggcatgggtccaagaccctttgga
ccgtatggaccgaggttcggtggtgatttcagaggaccagtacccgggatgatgtttccg
ggtagacctccgcaacagtttccacatggcggttatggtatgatgggaggcggacgtggc
ccgcatatgggaggaatgggaaacgctcctcgaggaggcaggccgatgtattatccacca
gcaacatcatcagcacgtcctggccccaccaaccggaaaacacctgagagaagcgatgag
agaggagtgggggcggatcaacaaaatcaggatacatcacatgacatggagcagtttgag
gttggaaacagtttaagaaacgaagagagtgaaagtgaagacgaagacgaagctccaaga
cgatcaagacatggagaaggaaagaagcgtcggtga
DBGET
integrated database retrieval system
