Alteromonas mediterranea DE1: amad1_06535
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Entry
amad1_06535 CDS
T02340
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
amaa
Alteromonas mediterranea DE1
Pathway
amaa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
amad1_06535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amaa03400
]
amad1_06535
DNA repair and recombination proteins [BR:
amaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
amad1_06535
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
amad1_06535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
UB2H
AAA_30
Kinesin
Microtub_bd
AAA_22
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AFV84818
LinkDB
All DBs
Position
1441600..1443615
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AA seq
671 aa
AA seq
DB search
MSRGFELHSKYKPAGDQPKAIEALVDGLESGLAGQTLLGVTGSGKTFTMANVIKEVQRPT
LILAHNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDHIE
QMRLSATKALMERRDVVIVASVSAIYGLGDPESYMKMLLHLRQGDTMDQRDILRRLAELQ
YKRNDLAFERGTFRVRGDVIDIFPADSEKQAVRVELFDDEIDKISLFDPLTGAVDKSVIR
ATVFPKTHYVTPREKILNAIEHIKDELGGRKKQLQEANKLIEEQRISQRTQFDIEMMMEL
GYCSGIENYSRYLSGRAPGEPPPTLLDYFPADGLMFIDESHVTVSQVGAMYRGDRSRKET
LVEFGFRLPSALDNRPLKFEEFEQICPQTIYVSATPGDYELRKTEGEIVEQVVRPTGLLD
PIIEVRPVATQVDDVLSEIKKRVELDERVLITTLTKRMAEDLSEYLNEHGVKVRYLHSDI
DTVERIEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRAERSLIQTIG
RAARHINGRAILYADTITKSMKKAMDETERRREKQMAHNEANNITPMRLNKPITDIMDLG
ESAHPASGKVRLRKVEEKKSKQKAASATELMDQITELEKQMFEYARELEFEKAASLRDDI
EALRKQVVALS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagtagagggtttgagcttcattcgaaatacaagccagcgggcgaccagcctaaggcg
atagaagctttagtggacggtttagaaagcgggttggcgggtcaaacactcttaggggtg
acggggtcgggtaaaaccttcaccatggcgaatgttattaaagaagttcagcgccccacg
cttattcttgcgcacaacaaaaccctggcagcacagctatatggagaaatgaaggaattc
tttcctaataatgcggtagagtactttgtttcttactatgactattaccagcccgaagct
tatgtaccaagtacagatacctttatagagaaagacgcgtctattaatgaccacattgaa
caaatgcgactatcggccaccaaagcgctgatggagcgcagagacgttgttattgtggca
agtgtgtctgccatttatggtttgggcgaccctgaatcttacatgaaaatgttgttgcac
ctacgtcagggcgacaccatggaccagcgtgatatcttacgtcgccttgcagagttacag
tacaaacgcaacgatttagcctttgagcgaggcacgtttcgagttcgaggcgatgtgata
gatatcttccccgctgactcagagaagcaagcggtaagggtggaattgtttgacgacgaa
attgataagattagtttattcgaccctttaactggggcggtagataagtcagtgatccgc
gccaccgtttttccgaaaactcactacgtaacaccacgagaaaaaatattaaatgccatt
gagcatattaaggatgaactcggagggcgcaaaaagcagcttcaagaggcaaataaactt
attgaagagcagcgcatttctcagcgaactcagttcgatatcgagatgatgatggaacta
ggctactgctcgggcatagaaaactattctcgttatctttctggccgcgctccgggcgag
ccgccacctacattattggactattttccggctgatggtttgatgtttatcgacgagtct
cacgttacggtttctcaagtcggtgctatgtatcgaggtgaccggtcgagaaaagaaacg
ctagtggagtttgggtttcgactgccgtctgccctagataataggccgttaaagtttgaa
gagtttgagcaaatttgccctcaaacgatttatgtgtcggcgacaccgggtgattacgaa
ctaaggaaaacagagggcgagattgtcgagcaggtcgtacgcccaacaggcttactcgac
cccattattgaagttcgccccgttgctacgcaagttgacgatgtactgtctgaaattaaa
aaacgtgttgagctagatgaacgggtactcatcactacgctcactaagcgcatggccgaa
gatttaagtgaatatttaaatgaacacggcgttaaagtgcgttatctgcactcggacata
gataccgttgaacgtattgagatcattcgcgatttacgcttaggtaaattcgatgtgctg
gtggggattaacctgttgcgtgaaggtttggacatgcccgaggtatcattggttgctatt
ttagatgcagacaaagaaggctttttgcgtgcagagcgctctcttattcaaaccataggt
cgtgccgcgcgacacataaacggtcgtgccatactgtatgcagacacgattaccaagtcg
atgaaaaaagcgatggacgaaaccgaacgtcgtcgtgaaaagcaaatggctcacaacgaa
gcaaataacattacccccatgcgacttaataaacctattaccgatatcatggatttaggg
gaaagtgcgcatcctgcatcaggtaaggtaaggcttagaaaagttgaagagaagaagagt
aaacaaaaagcagcgagtgcgactgagttgatggatcaaattaccgaacttgaaaagcaa
atgttcgaatatgcccgcgagttagagtttgaaaaggctgcatcgctacgcgacgatatt
gaagcactacgcaagcaagttgtcgcgctctcctaa
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