Algicella marina: GO499_01525
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Entry
GO499_01525 CDS
T08414
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
amaq
Algicella marina
Brite
KEGG Orthology (KO) [BR:
amaq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amaq03019
]
GO499_01525 (hrpB)
Enzymes [BR:
amaq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GO499_01525 (hrpB)
Messenger RNA biogenesis [BR:
amaq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GO499_01525 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_30
Flavi_DEAD
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QHQ33952
UniProt:
A0A6P1T0C3
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All DBs
Position
286175..288598
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AA seq
807 aa
AA seq
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MPPAALPIEPVLAPLLAGLSAHGVAVLQAPPGAGKTTRVPLYLAEEAGFGGRILMLEPRR
VAARAAAERLAEAWGEVPGDSVGYRMRGDSKPGRRIEVITEGTLARMIQSDPELRGISCV
IFDEFHERALQSDLGLALCLEIRAALREDLHLLVMSATLDAEPVAALMGNAPVITSEGRA
FSVEERFLDRPVKLERFGAFESAVADLVAQALAETEGGVLVFLPGKAEIARVAQRLRPEP
GVEVMELHGGLSLAAQRRVVQPLEGRRKVVLSTAIAETSLTLADIRVVVDGGRARRARFD
PGKGMARLVTERVSRAEATQRMGRAGRVAPGWCYRLWTKGEAGAMPAFAPPEIEVADLAP
LALDLAVWGARQPEDLPFLTPPHPGSFAEARALLTELGALDESGTLTEAGRAMAAVPAHP
RLARMLVAGGGTQAADLAALVEGRLEGEDVDLGVSLRALRGGDGLSKAARGALRQEAERL
RRHAAAERGLSSGALLSLAYPDRIALRRPGGQPRYLLSGGAGGILRDSDSLAGQRLLVAA
DLDGDRREARIRKALAISESEVREVHGNRLKEQRICKWDRRTRSVQAREQVTLGALVLEE
RHWTGAGDDEVLPALLEGIRDLGLAVLPWGKAATALRARAEWARASGLELPPCDDASLMM
ALEEWLLPWMAGMRRLEDFAALDLNAALQARLGGLAEIDRLAPARFTAPTGTAVLIDYSG
EAPAAQIRLQEVFGLTVHPVLGAKRLPLVLELLSPAGRPVQKTADLPGFWANSYADVRKD
MRGRYPRHPWPENPAAATPTRRAKPRT
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
ttgccgcctgccgcattgccgatagaacctgtactggccccgcttctggcggggctaagt
gcgcatggggtggcggttttgcaggcgccgccgggagccggaaaaaccacacgggtgccg
ctgtatctggcagaggaggccgggtttggcggccgtatcctgatgctggagccgcggagg
gtggcggcgcgggcggcggcggagcggcttgcggaagcctggggcgaggttccgggcgac
tcggtgggttaccggatgcgcggggacagcaagcctggccgccggatcgaggtgatcaca
gagggcactctggcgcggatgatccagagcgacccggaactgcgcggaatttcctgcgtg
attttcgacgagtttcacgagcgggcgttgcaatccgacctcgggctggcgctctgcctc
gaaatccgcgctgcgctgcgcgaggacctgcatctgctggtgatgtcggcgacgctggac
gccgaaccggtggcggcgctgatgggcaatgccccggtgatcacttccgaagggcgggcg
ttttcggtggaggagcggtttcttgaccggccggtgaaactggagcggttcggcgcgttc
gagagcgcggtggccgatctggtggcgcaggcgctggcggagacggagggcggcgtgctg
gtgttcctgcctggcaaggcggagatcgcgcgggtggcacagcggctgcggccggaaccg
ggcgtggaggtgatggaactgcacggcgggttgtcgttggccgcgcagcgcagggtggtg
cagccattggagggccggcgcaaggtggtgttgtcgacggcgatcgccgaaacctctttg
acactggcggatatccgggtggtggtcgacggtggccgggcgcggcgggcgaggttcgat
ccgggcaagggcatggcgcggttggtgaccgagcgggtaagccgggcggaggccacgcaa
aggatggggcgtgcgggccgggtggcgccgggctggtgctaccgcctgtggacgaagggc
gaggcaggggcgatgccggctttcgcgccgccggaaatcgaggtggcggaccttgcaccg
ctggcgctggatctggcagtctggggtgcgcgtcagccggaggacctgcccttccttacg
ccaccgcatcccggcagtttcgccgaggcacgggcgctgctgacggaacttggggccctg
gacgagagcggcacgctgacggaggccggccgggcgatggcggcggtgccggcccatccg
cgactggcacggatgttggtggccgggggcgggacgcaagcggctgatctggcggcgctg
gtggaggggcggctggaaggtgaggacgtggatctcggggtgtcgctgcgggcactgcgg
ggcggcgacggcctctccaaggcggcgcgcggggcgctgcggcaggaggcggagcggttg
cggaggcacgcggctgcggagcgcggactgtcctccggtgcactactatcgctcgcctat
cccgacaggatcgcgttgcggcggccgggtggccagccgcgctacctgctttccggtggt
gcgggcggcattctgcgggacagtgacagccttgccggacaaaggttgctggtggcggcg
gacctcgacggtgaccggcgggaggcgcgcatccgcaaggcactggcgatcagcgaaagc
gaagtgcgggaggtgcatggcaaccggctgaaggagcagcggatttgcaagtgggacaga
cggacgcgcagtgtgcaggcgcgcgagcaggtgacccttggggcgctggttctggaggag
cggcactggacgggtgcgggcgacgacgaggtgctgcctgcgctcctcgagggcatccgc
gaccttggtctggcggtgttgccatggggcaaggctgcgaccgcgttgcgggcacgggcg
gaatgggcgcgggccagcgggctggagctgccgccatgtgacgatgccagcctgatgatg
gcgctggaggaatggttgctgccgtggatggccgggatgcggaggctggaagactttgca
gccctcgacctgaacgcggcgttgcaggcgcgactgggaggactggcggaaatcgaccgg
ctggcgccggcccggttcacggccccgacgggtacggccgtgctgatcgactacagcgga
gaggctccggctgcgcagatccgcctgcaggaggtattcggcctgacggtccatcctgtt
ctgggcgcgaagcgactgccgctggtgctggagctgctgtcgcccgccgggcggccggtg
caaaagactgcggacctccccggcttctgggccaattcctatgccgatgtgcgcaaggac
atgcgggggcgctacccgcggcatccgtggccggaaaacccggcggccgcaacgccgaca
cgccgcgccaagccgcggacctga
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