Astyanax mexicanus (Mexican tetra): 103023017
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Entry
103023017 CDS
T05042
Symbol
smarca4
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103023017 (smarca4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amex03021
]
103023017 (smarca4)
03036 Chromosome and associated proteins [BR:
amex03036
]
103023017 (smarca4)
Transcription machinery [BR:
amex03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
103023017 (smarca4)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
103023017 (smarca4)
Chromatin remodeling factors
BAF complex
103023017 (smarca4)
PBAF complex
103023017 (smarca4)
GBAF(ncBAF) complex
103023017 (smarca4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
Bromodomain
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Motif
Other DBs
NCBI-GeneID:
103023017
NCBI-ProteinID:
XP_022529409
Ensembl:
ENSAMXG00000021023
LinkDB
All DBs
Position
2:complement(11816583..11842067)
Genome browser
AA seq
1621 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHGMMGPSPGPPSAGHPLPPQG
PSGYPQDNMHQMHKPMEGMHEKGMPDDPRYGQMKGMSMRQGAHSGMGPPPSPMDTHSQGY
PSPLGGSEHAPSPVPANGPPSGPMMPSGPGGVPMEGNDPQAMGQQNRGGGPPAGPGSGPS
GGPPGAGGPGGAGGPTPFNQNQLHQLRAQIMAYKMLARGQALPDHLQMAVQGKRPMPGMQ
QGMPNMPPASGPGAGPPGPGGPVGPGGPVGPGVPGPAGPNYNRPHGMPLPGPGPSGVPPG
MQGQPPNGPPKSWPEGPMVNAAAPASAPQKLIPPQPTGRPSPAPPSVPPAASPVMPPQTQ
SPGQPAQPPTMMLHPKQNRITPIQKPRGLDPVEILQEREYRLQARITHRIQELENIPGSL
AGDLRTKATIELKALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARI
TEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSITGKVQKVTKAVATYHANTE
REQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHK
AVQALKEKKKKKKKKKTGENGEGGALALGPDGEALDETSQMSDLPVKVIHVDSGKILTGL
DAPKAGQLETWLEMNPGYEVAPRSDSEDSGSEEEEEEEEEQQLAQAVATEEKKKIPDPDS
EDVSEVDARHIIDHAKQDVDDEYGSAAFEVGLQSYYSVAHAVTETVDKQSTLMVNGTLKQ
YQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEYKRINGPFLIIVPLSTLS
NWVLEFDKWAPSVVKVSYKGSPAARRAFLPILRSGKFNVLLTTYEYIIKDKQVLAKIRWK
YMIVDEGHRMKNHHCKLTQVLNTHYLAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSC
STFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVI
KCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE
ESFSEHLGFTGGIVQGPDLYRASGKFELLDRILPKLRATNHKVLLFCQMTTLMTIMEDYF
AYRNFKYLRLDGTTKAEDRGMLLKNFNDPASSYFVFLLSTRAGGLGLNLQSADTVIIFDS
DWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQ
KSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQMIARSEEEFDHFMRMDLDRRREEAR
NPKRRPRLMEEDELPTWIMKDDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTEKQWL
KAIEEGTLDEIEEEVRHKKTTRKRKRDRDLDLPGPSTPSSSGGRSRDKDEDGKKQKKRGR
PPAEKLSPNPSSLTKKMKKIVDAVIKYKDGNGRQLSEVFIQLPSRKELPEYYELIRKPVD
FRKIKERIRSHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEK
EEESEGEESEEEEEDAEEGSESESRSVKVKIKLSRKEKAEKSGKGRRRTGRGSRPKPRGQ
R
NT seq
4866 nt
NT seq
+upstream
nt +downstream
nt
atgtccactccggacccccccatgggagggaccccacggcccggcccttctccaggccct
gggccctctccaggggccatgctgggtcctagtcctgggccttctcctggctctgctcat
ggaatgatgggtcctagcccagggccaccatctgcagggcaccctctacctcctcaagga
ccctctggttatcctcaggacaacatgcatcagatgcacaagcctatggaaggcatgcat
gagaagggcatgccagatgaccctcgttatggccagatgaagggcatgagcatgagacaa
ggtgctcacagtggcatgggaccaccacccagtcccatggatacgcattcacaaggttat
ccctctcctttaggtggttctgaacatgcccctagtccagtgccagctaacggccctcct
tctggccccatgatgccctcaggccctggtggcgtccccatggaaggcaatgatcctcag
gcaatgggccagcagaatcgtggtggaggccctccagcaggcccaggctcgggtcccagt
ggaggacccccaggtgctggtggaccagggggtgcaggaggaccaacacccttcaaccag
aaccagctccaccaactgcgtgcacagataatggcctacaagatgcttgctcgagggcag
gctctgcctgaccacttgcagatggcagtgcagggtaagcggcccatgccgggcatgcag
cagggcatgcccaacatgccaccagcatctggacctggagctggtcctcctggccctgga
ggtcctgtgggccctgggggacctgtaggccctggagtccctggaccagcaggccccaac
tacaacagacctcatggaatgcctcttccaggaccaggaccctccggtgtacccccaggc
atgcagggtcagccccccaatggaccgcccaaatcatggcctgaagggcccatggtgaat
gctgctgctccagccagtgctcctcagaagctgatccctccccagccaactggtcggcca
tctccagccccgccctcagtgcctcctgctgcatccccggtcatgccccctcagacccag
tcccctgggcaaccagctcagcctccgaccatgatgctgcaccctaaacaaaaccgcatt
acacccattcagaagcctagaggcctggatcctgtagagattctgcaggagagagagtac
agactgcaagcacgtataacccatcgcatccaggagctggagaacattccgggctctctg
gcaggagacctgaggaccaaagctacaattgaactcaaggcactgaggctcctcaacttc
cagagacagctccggcaggaggtggtggtgtgcatgcggcgtgacacagccctggagaca
gcgcttaacgccaaggcctacaaacgcagcaagaggcagtccctgcgtgaggctcgcatt
actgagaaactggagaagcagcagaagatcgaacaggaacgcaagcgccgccagaaacat
caggaatatctgaatagtatcctccagcatgcaaaggacttcaaggagtaccatcgttct
atcacaggcaaggttcagaaagttaccaaagccgtggccacctaccacgccaacacggag
cgggagcagaagaaggagaatgagcgcatcgagaaagaacgtatgcggaggctgatggct
gaagatgaagaaggttacaggaagctgattgatcagaagaaggacaagcgtctggcctac
ctgctgcagcagacggacgagtacgtggctaacctcaccgaacttgtgcgtgcgcacaag
gcagtgcaagcgctcaaggagaagaagaagaaaaagaaaaagaagaagactggagagaat
ggtgagggtggagctcttgcattgggtccagatggagaggctcttgatgagaccagtcag
atgagtgaccttccagttaaagtgattcatgtggacagtggcaaaatcctgactggtttg
gatgctcctaaagctggccagttggagacctggctggagatgaaccctgggtatgaggtc
gctccacgttctgacagtgaagacagtggatcagaggaggaagaggaggaagaggaggaa
cagcagcttgcccaggctgtggccacagaggagaagaagaaaataccagatccagacagt
gaggacgtatctgaggtggatgctcgccacatcattgatcacgctaagcaggacgttgat
gatgagtatggctctgcagccttcgaggtgggcctgcagtcttactactccgtagctcac
gccgtcactgagacagtggacaagcagtccactcttatggtcaatggaacactcaaacag
taccagattaagggtctggagtggctggtctctctgtataacaataatctgaatggcatt
ctggctgatgagatgggcttggggaagaccatccagaccattgcactaattacctacctc
atggagtacaaacgcatcaatggacctttccttatcattgtacccctctccacgctgtca
aactgggtgttggagtttgataagtgggccccatctgtggtaaaagtctcctacaagggc
tctcctgctgctcgccgtgcttttcttcctattctacgcagtggcaaattcaatgtgctc
cttaccacttatgagtacatcattaaagacaagcaagtgttggccaagatccgctggaag
tacatgattgtggatgagggccatcgtatgaagaatcatcactgtaaactgactcaggtg
ctcaacacacactacctggcccccagacgcctgctgctcacagggacccccctgcaaaac
aagctgcctgaactgtgggctctgctcaacttcctgctgcccaccatcttcaaaagctgc
agcacttttgagcaatggttcaatgcacccttcgccatgaccggtgaaaaggtggatctg
aatgaggaagagaccattctgatcattcgccgtctgcacaaagtgctccgccccttcctg
ctcaggaggctcaagaaggaagtggaggcacagctgcctgagaaggtggagtacgtcatt
aagtgtgacatgtcggctctgcagagagtactgtaccggcacatgcaggctaaaggagtc
ctgctcactgacggctctgagaaagacaagaagggtaaaggaggcacgaagacactgatg
aataccatcatgcaactcaggaagatctgtaaccacccatacatgttccagcacattgag
gagtccttctctgagcatttgggcttcacaggaggaattgttcaggggcctgatttgtat
cgtgcctcagggaagtttgagctgctggaccgcattctgcccaaactgcgagccacaaac
cacaaagtgctacttttctgtcagatgacgacccttatgaccattatggaggactacttt
gcataccgcaatttcaaataccttcgtctggatggaaccactaaggctgaggaccgtggt
atgctgctgaagaactttaatgacccagcctcttcgtacttcgtgttcttgttgagtacc
agagccggtggtctgggtctcaatctgcagtctgccgacaccgtaatcatttttgatagc
gactggaaccctcatcaggacttgcaggctcaggatcgtgcccaccgtatcgggcagcag
aacgaggtgcgagtgctgcgtctctgcaccgttaacagcgtggaggagaagatcctggct
gctgccaagtacaagctcaacgtggatcagaaggttatccaggctggcatgtttgaccag
aaatcctctagccatgagcgaagagctttcctgcaggcaatcctggagcacgaggagcaa
gatgaggaggaggatgaggtacctgatgatgaaacagtaaatcagatgattgccagaagt
gaagaggagtttgatcactttatgcgcatggatctggaccggcgccgcgaggaagcacgg
aacccgaagcgaaggcctcgtctcatggaggaagatgagcttcctacatggattatgaag
gatgatgcggaggtggagagactgacgtgtgaggaagaggaggagaagatgtttggtcgt
ggctcccgccagaggaaggaggtggactacagtgactcactcactgagaaacagtggctg
aaggccatagaggagggaacgctggatgagatcgaagaggaagtccggcacaagaagacg
acccggaagaggaagcgggaccgtgacctcgacctcccgggtccatccactcccagctct
agtggtggaagaagcagagataaagatgaggacggcaagaaacagaaaaaacgaggacgg
cctcctgccgagaaactctcccccaacccctcctccctcaccaagaagatgaagaaaatt
gttgatgccgtcataaaatacaaagacggtaatggaaggcagctgagcgaagttttcatt
cagcttccatctcgcaaggaacttcctgaatactacgagctcattcgcaaacctgtggac
ttccgcaagattaaggagcgcattaggagtcataagtatcgcagtctgaatgacctggag
aaggacgtcatgctgctctgccagaacgctcaaaccttcaacctggagggatcactgatc
tatgaagactccatcgtgctgcagtctgtgttcaccagcgtgcgtcaaaagattgagaag
gaggaggaaagtgagggcgaggagagtgaggaagaggaggaggatgcagaggaaggatca
gagtctgaatcgcgctccgtaaaagtgaagatcaagctgagccgtaaggaaaaggcagag
aaaagcgggaaaggcaggcggcgcaccgggcgaggttcacgccccaaaccccgtggtcag
cgatga
DBGET
integrated database retrieval system
