Astyanax mexicanus (Mexican tetra): 103024388
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Entry
103024388 CDS
T05042
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 8-like
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
103024388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
amex03036
]
103024388
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
103024388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Chromo
BRK
ResIII
DEAD
HDA2-3
MUN
Motif
Other DBs
NCBI-GeneID:
103024388
NCBI-ProteinID:
XP_022533611
LinkDB
All DBs
Position
16:complement(6769321..6813886)
Genome browser
AA seq
2579 aa
AA seq
DB search
MADPIMDLFDDTPLFNLDSLPEDAFSQGSSDPVEEALKLALGQVDPPVDPPVDPPVDPPV
VPASVPPSQPVSDPPIVPVLINPAPAPVPIAAPVPSVQLQTQQTTHISLAQAVSISPAPV
TVQAVPQTSLPVATSSGAPTTVLLSSHLGVPVSGAQVTTQQLAAVTQQTAGQTAPKIVIL
KGPQGQAQVLQSVGGNAGSPGKLTIARVLTGTPLRPGMSIVSGGTVLNAAQPVQGQVKVG
TGVQRLVQTPNGPVKQVLMTTLPQTQTQVQIPAQTQLTQPQVQQLQIQAQAQPAQVQTQV
QLQTQATVQAQGQGQAAPAGGATATVRPQGITLATVPQQGEAKRITLVLQQPAQGGAAQA
GAVTLGSAPGAGAGQQGQQHRLVLGSLPGKLVLQGGQLAALTQARTGQTGAQPKVLTIQL
QVQQQPNQQGAKFQLVSGAPGAGGSPQVVQISQGQGGQRLAVPLKLLLQPQTSSASGAGA
VSVVKVINTSAGSATSPCTTATVAGVRVAKAPDSVRKVESLCKQEKANRIVAEAIARAKA
RGERNIPRVLNQDELPAGQTSTDQDGSATPAGAKKKSSGGSKKKSPTSGAAGKSVASGDK
KVKVKTPGSTVAGGAGGSGSKSKSKTKPNTITLVGIKKRKRNPSSDHSDGELSPPASPRT
QEEDLSQMRRSNRQVKRKKYTEDLDIKITDDEDEPEEEVDVTTPAVVTTGLPQPVAPELQ
GLEGDGLPSMQFFVENPSEEDAAIVDKILSMRLTKKEVSQGHYITVEEFFVKYKNYSYLH
CEWASMEQLERDKRIHQKLKRFKTKQAQMRRIFQEDEEPFNPDYVEVDRILDESNSIDKD
NGEPVVYYLVKWCSLPYEDATWELKEDVDEGKVEEFRKIQSRQPRLKKTPRPPASSWKKL
EQSREYRSGNTLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIALLSEVFAAGVQ
GPFLIIAPLSTITNWEREFSTWTEMNAIVYHGSLASRQMIQQYEMYCKDEKEHLIPGAYK
FDALITTFEMILSDCPELREINWRCVIIDEAHRLKNRNCKLLDSLKMLNVEHKVLLTGTP
LQNTVEELFSLLHFLEPAQFPSETEFLRDFGDLKTEEQVQKLQAILKPMMLRRLKEDVEK
NLAPKQETIIEVELTDVQKKYYRAILERNFSFLSMGASSNSNVPNLLNTMMELRKCCNHP
YLITGAEEKIVAELRAVYDPSAPDFHLQALVRSAGKLVLLDKLLPRLKAGGHKVLIFSQM
VRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKLDSDRFVFLLCTRAGGLGINL
TAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMLDKASLKLGLD
RAVLQSMSGSKDSNVNGIQQFSKKEIEDLLRKGAYAAIMDENDEGSRFCEEDIDQILQRR
ATTITIESEGKGSTFSKASFVASENRTDIALDDPEFWQKWAKKADIDLDSINRKNTLVID
TPRVRKQTRQFSTLRGDGGDLSDMDSDDEYPPHNSRQARASRRSDRHAGGGYGRTDCFRV
EKHLLIYGWGRWRDILGHARCKRRLGEKDVETICRVILVFCLLHYRGDENIKSFIWQLIT
PPENGQEPHSLLNHSGLSIPVPRGRKGKRVKTQSSFDVQKVEWIRKYNPETLLLDESYRK
HLKHQCNKVLLRVRMLYYLKQEVIGEHADAVLRGVDGRDIDIWLPEMEQQDVPTAWWNAE
ADRCLLLGVYKHGYEMYTTMRADPCLCFLERCGRPDDQEIKAEQHAGDAELGDGPDFDKY
SEDPEFRPMRHGKDMFAETDSRNADEICVDDHMNPMLAEVQASTTSTYWPSSSSLTARLR
RLVTAYQRSYRREQLKMEAAEKGDRRRRRCEQASKLKEIARQERQQRWTRREECDFYRVV
STFGVERIKSEEGVQENEETRLDWARFRTFARLDKKTDESLSRYFRCFVAMCRRVCHLRP
TPGEESQDLSQSLAPITEERASRTLYRISLLCRLRERILPHPSLEERLSLAPPSSDLPRW
WSIPQHDHELLLGAVYHGVSRTEQSIFPDPQFSFSQARQDYLQNQQTAPAVPVQTHSQTL
EKSSVKEERLDEEARLLGMETICQSDSLVTPLSYSKGEGGGPFGWSWKKSRGSKGKKVRD
TAGGEQSDSDSDSDSDSSTSSHRSGSSDDSGDSDVERQQVLSTAPLKMCDVDEENSTLSF
TPSQDGALPESVSETHRVDWPKDRVLITRIDNLCNLVLTGHWQSGXRYTTDPQLTLPSDE
HGLGDDLNYARVSRRANTTLSGEAVDGQESEFTVKLLKEEGLKLTFSKQALLPNGSPGEA
SSRRKRKDLELFDSGGGLHAPRKRDLPNWLKENPDYAVEGDMLEMLVNRTKRKRRKKRIE
KGANLTGIERVKVIDMRTGKKYGGIYGPALQDLKEYLEENPDHAVAPEWADAVRSSGFLP
EGYFHRLLTLHTSFPKKSHHYLSDPSAQSDPLLGAVETETLVSDGAYMMDDEDLDGGDLT
SSHHFLTSAYDVKMEAGSLDMDGGDGLSQGGYDSSDREAILDDVIMAPKNTDSSSSSED
NT seq
7740 nt
NT seq
+upstream
nt +downstream
nt
atggctgaccccataatggacctatttgacgacacaccactgttcaaccttgactccctg
ccagaggatgcgttctctcagggctcttcagaccctgttgaggaggcactaaagttggcc
cttggccaggttgatcctcctgttgatcctcctgttgatcctcctgtagaccctccagta
gtcccagcctctgtcccaccttcacaaccagtctcagaccccccgattgtccctgtcctt
attaaccctgccccagctccagtacccatagcagccccggttccatcagtacagcttcag
acgcagcagacgacccacatctcgcttgcgcaggcggtgtccatttctcctgctccagtt
actgttcaggcagtgcctcagacctcccttcctgtggccactagcagtggtgcaccgacc
acggtgctgctaagctcccacttgggtgtgcccgtgtctggggctcaggtcaccacgcag
cagcttgctgcggtcacgcaacagactgccggccagacggcccctaaaatagtgatcctg
aagggccctcagggtcaggcccaggtgctacagagtgttgggggaaatgcaggctcgccc
ggaaagctcaccatcgcccgagtcctgaccgggactcctctgagacctggaatgtctatc
gtatcaggcggcactgtgttaaatgcggcgcagcccgtgcagggacaggtgaaagtaggc
acaggtgttcagaggctggtacagacacccaacggacccgtcaagcaggtgctgatgact
acattaccccagactcaaacgcaggtgcagatacctgcgcagacgcagctcacacagccg
caggtgcagcagctgcaaatccaggcccaagcacagccagcacaagtgcagacgcaggtc
cagttgcagacgcaggccacagtgcaggcacaaggtcaaggacaggctgctccggctggt
ggagctacagcgacagttcggccgcaaggaataaccctggccacagtcccacaacagggc
gaggctaagagaatcacactggtgctacagcagcccgctcagggtggagctgctcaggca
ggagccgtgacacttggcagcgctccaggtgcaggggccggacagcagggccagcagcac
aggctggtgttgggctctctgccggggaagttggtccttcaggggggccagctggcagct
ctcacccaggctagaacaggtcaaacgggggcacagcccaaagtgctcaccatccagctg
caggttcagcagcagcccaaccagcagggggccaagtttcaactagtctctggtgcaccg
ggtgctggtggcagcccacaggtggtgcagatttctcaaggccaaggaggacagagactg
gcagtgcctctaaaacttctgctacagccacagacgagctcggcctctggtgcaggagct
gtgtctgtggtcaaagtcatcaatacctcagctggctctgccactagcccttgcaccacg
gccactgtggcgggggtacgcgtggccaaagccccggactccgtgcgcaaagtggagagc
ctgtgtaagcaagagaaagccaatcgtattgtagctgaggccatcgctcgggctaaagcc
agaggtgagaggaacatcccgcgggtgctcaaccaggatgaactgcctgccggacagact
tccactgaccaagacggctctgcgactcccgctggggccaagaagaagagtagtggaggc
agcaagaagaagagccctacctcaggtgctgcagggaaatctgtggccagcggggataag
aaggttaaggtgaagactcctgggtctacagtggctggaggagcaggaggaagtggcagt
aaaagtaaaagcaaaacaaaacccaacaccattactctagtgggtatcaagaaaagaaag
agaaatccatcttctgatcattcagacggggagctgagtcctcctgcctcgcctcgcaca
caggaggaggatttatctcagatgagacgctccaatcgtcaagtgaaaagaaaaaagtac
acagaggatttagatattaaaatcacagatgatgaagacgagccagaggaggaagtggac
gtgaccactccagcagtcgtgacaacagggctgcctcaacctgttgcccctgaacttcag
gggctagaaggagatggccttcccagcatgcagttctttgtggaaaatccaagtgaggaa
gatgctgcgattgtggataaaatcttgtccatgcgtctgaccaaaaaggaggtgtctcaa
ggacattatatcactgttgaggaattctttgtcaagtacaaaaactactcttacttgcac
tgtgaatgggccagtatggagcaacttgaaagggacaaaaggatccaccagaaactgaag
aggtttaagacaaaacaagctcaaatgagacgcatctttcaggaggatgaggagcctttc
aatccggattacgtggaagtggaccgcatcctggatgaatccaatagtatagacaaagac
aatggagagccggtggtgtactacttggtgaagtggtgctctctgccctatgaagatgcc
acatgggagctgaaggaagacgtagacgaggggaaggtggaggagtttaggaagatccag
agtcgccaaccaagactcaaaaaaacgccccgcccacctgcaagctcctggaagaagctg
gagcagtcccgagagtaccgtagtgggaacaccctccgagagtaccagctagagggagtc
aactggctgctcttcaactggtataacaggcaaaactgtattctggcagatgaaatgggt
ctgggtaaaaccatccagtcgattgcgctgctgtctgaagtgtttgctgcaggggttcag
gggccctttctgatcattgcccctctatcaaccatcactaactgggaacgggagttctcc
acgtggaccgaaatgaacgctatcgtgtatcacggcagcctggccagccggcaaatgatc
cagcagtatgagatgtattgtaaagatgaaaaggagcacctgatcccaggagcatacaag
tttgacgctctgatcacaacatttgaaatgattctgtcggactgcccagagctgagggag
atcaactggcgctgtgtgattattgacgaggctcaccgcctgaagaatcggaactgcaag
ctgctcgacagcctgaagatgctgaacgtggaacacaaagtgctgctgacgggaactcct
ctgcagaacaccgtggaggagctgttcagtctgctgcactttctggagccggcccagttt
ccctccgaaacagaattcctgcgtgattttggagatcttaaaacagaggagcaggtgcaa
aaactgcaagcaattctgaaacccatgatgctgcgcagactaaaggaggatgtagagaag
aacttggcaccgaagcaggagaccattattgaggtggagttgacagatgtgcagaagaag
tactaccgtgccattctggagcgcaacttcagcttcttgagcatgggagccagttccaac
agcaacgtccccaatctcctaaacaccatgatggagcttcgcaagtgctgcaaccacccg
tatctgatcacaggggcagaagagaagatcgtagctgagctgagagcggtgtacgacccc
tcagctccagacttccaccttcaggccctggtccgctctgcaggaaagctcgtcctgctg
gataaattactgcctcggcttaaggctggtggacacaaagtgctgatcttctctcagatg
gtgcggtgcctcgatatactggaggactacctcatccataaaaggtatctttatgaacgc
attgatggtcgagtaaggggaaacctccgacaggcggccattgatcgcttcagtaagttg
gactccgaccgcttcgtcttcctactgtgtacccgagctggaggcctgggtattaacctg
actgctgcagacacctgtgttatattcgactccgactggaacccccaaaacgaccttcag
gcccaagcacgttgtcatcgtatcggccagtctaaggcagtgaaggtgtatcgcctgatc
accagaaactcttatgagcgggagatgttggacaaagccagtctgaaactgggtctggac
cgagctgtgcttcagagtatgagtggcagtaaggacagtaatgtcaacgggatccaacag
ttctctaaaaaggaaattgaagatttgctgcggaagggagcctatgctgcgatcatggat
gagaatgatgaaggcagccggttctgcgaagaggacattgaccagatcctccagaggaga
gccaccaccatcactattgagagtgaaggcaagggctccaccttctccaaggccagcttt
gtggcgtctgagaacagaacagacattgccctggatgacccggagttttggcagaagtgg
gccaagaaagcggacatagacttggacagcatcaacagaaagaacacacttgtgatagac
acgccacgagtgcgcaagcagacacggcagttttccactctgcgaggggacggtggtgat
ctttccgacatggacagtgatgatgagtacccacctcacaattccagacaggcccgcgct
tcccgacgctccgaccgccacgccggtggaggatacggtcgcactgactgtttcagagtg
gagaagcacctgctgatttatggctgggggcgctggcgggacatccttggtcatgcgcgc
tgtaaacgccgtctaggagagaaggatgtggaaactatctgcagggtgatcttggtcttt
tgtctgctgcattaccgtggagatgagaacattaagagtttcatatggcagctcatcact
ccaccagagaacggccaagaaccacattctcttcttaaccactccggtctgtccatcccg
gtccctcgtggcaggaaggggaagagggtgaagactcagagctccttcgatgtacaaaag
gttgagtggatccgcaagtacaaccctgagactcttctgctggacgagagttaccgcaaa
catcttaagcaccagtgtaacaaggtattgctgcgagtgcgtatgctgtattatctgaaa
caggaggtaattggggagcatgccgatgctgtactgagaggagttgatggcagggacatt
gatatttggttacctgaaatggaacaacaggatgttccaacggcgtggtggaatgcagaa
gctgacaggtgcttgctgcttggtgtctataaacatggatatgagatgtacactaccatg
cgtgcggatccctgtttgtgtttcctggagcgatgtggtcgccccgatgatcaagagata
aaggctgagcagcacgcaggagatgcagagctgggagatgggccagactttgacaaatac
tcagaggacccagagttcaggcctatgaggcacggtaaagacatgttcgcagagactgac
tccaggaatgcggatgagatctgcgtggatgatcacatgaatcccatgctagctgaggtg
caggcctctactaccagcacttactggccgtcaagctcctcgctcacagcacgactccgg
cggctagtcacagcctaccagcgcagctacagacgagagcagctgaagatggaagctgca
gagaaaggagaccggcgccggcggcgctgcgaacaggccagcaaactcaaagagatcgcc
cgtcaggaacggcagcagaggtggacccgtagagaggagtgtgacttttaccgggtggtg
tccacgttcggtgtggagagaataaagagtgaggagggtgtccaagagaacgaggagacc
agactggactgggcacgattccgcacgtttgcacggctggataagaaaacggacgagagc
ctgtcacgatacttccgctgctttgtagccatgtgccgaagggtgtgtcacttgcggccg
acccctggagaagaatctcaagacctgtcccagtctctagctcccatcacagaggagcga
gcctcacgcacactgtaccgaatcagcctgctgtgccggctgcgggagcgcatccttccc
cacccctccctggaggagcgcctttccctcgcaccacccagctctgacctgccccgctgg
tggagcatcccccagcacgaccacgagctgctcctcggcgccgtctaccacggcgtgagc
cgcacggagcaatccatcttccccgacccgcagttttccttcagtcaggcccgtcaggac
tatctgcagaaccagcagacggccccggctgtgccggtccagacacacagccagacgctg
gagaagagcagcgttaaagaagagcggttagacgaggaggctcggctcctggggatggaa
actatttgccagtcagactctctggtcacgccgctctcctactctaaaggggagggcgga
ggtcccttcggctggagctggaagaagagcagggggtctaaaggaaagaaagtaagagac
actgctggaggagaacagtcagactctgattcagattctgactcagactcgtcaacttcc
tctcatcgttcaggcagctcagacgacagtggggacagtgatgtggagaggcaacaggtt
ctttctacagctcctttaaagatgtgtgatgtggatgaagagaacagtaccctctcattc
acaccgtctcaagatggagctctgccggaatccgttagtgaaactcatcgtgtcgactgg
cctaaggaccgtgtgttgataacccggatagataacctgtgtaatctggttctgacgggg
cactggcagtccggcnggcggtacaccacagatcctcagctgaccctgccctctgacgag
cacgggcttggtgatgacctgaactacgcccgcgtgtcccgacgagccaacaccaccctc
tctggagaggctgtggatggacaagaatcagagtttactgttaagctgttgaaagaggaa
gggctgaagttgacgttctccaaacaagctcttctgccaaacgggtcaccaggggaagca
agcagtcgacgaaagcgcaaagacctcgagttgttcgattcagggggaggactccacgct
ccgcgcaagagggacctgcccaactggctgaaggagaacccagactacgcagtggagggt
gacatgctggagatgctggtgaacaggaccaaaaggaagaggagaaagaagaggatagag
aaaggagcaaatctcactggcatcgagagggttaaagttatagacatgaggactggcaag
aagtatggaggaatatatgggcctgcactgcaagacctgaaggagtatctggaagagaat
cctgatcacgctgtagcacctgaatgggcagatgctgtccgcagctcgggcttcctgcca
gaaggctacttccacagactcctgactctgcacacttccttccccaagaagagccaccat
tacctctctgacccttcagcccagtccgaccctctcctgggggcagtggagactgagaca
ctggtctcggatggagcgtacatgatggacgatgaggacctggacggcggcgacctcacg
tcctctcaccacttcctgacgagcgcctacgacgtaaagatggaggcgggctctctggac
atggacggaggggacggtctgtcgcagggcggctacgacagctctgacagggaggccatt
ttggatgatgtcatcatggcacctaagaatacggattcttcctcgagctcggaggattga
DBGET
integrated database retrieval system
