Astyanax mexicanus (Mexican tetra): 103024772
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Entry
103024772 CDS
T05042
Symbol
thsd4
Name
(RefSeq) thrombospondin type-1 domain-containing protein 4 isoform X3
KO
K23377
thrombospondin type-1 domain-containing protein 4
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
103024772 (thsd4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
amex04990
]
103024772 (thsd4)
Domain-containing proteins not elsewhere classified [BR:
amex04990
]
Thrombospondin domain-containing proteins
ADAMTS-like proteins
103024772 (thsd4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP1_ADAMTS
ADAMTS_spacer1
TSP_1
ADAMTS_CR_3
TSP1_CCN
TSP1_spondin
Motif
Other DBs
NCBI-GeneID:
103024772
NCBI-ProteinID:
XP_007251942
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All DBs
Position
18:29606057..29715602
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AA seq
829 aa
AA seq
DB search
MSRRVSMVSFAMVMALLWSIPTDCQLPANHKKVSPRSESQPGVNDDVPQGSWGSWGPWGE
CSRSCGGGVHQQTRPCLPTVTPLAAAYTPRQAPHVGHQEPGHVESALRPSVPVHRGNTHL
TSRGQPRKQQNEVRPGRRRSSSRITPGMYGYGKMPYVMSSQSDQNIHTNLHQYRPPSDYR
HHSYRRQQQQQQLNNRNTHQITHHNSHHNTNQQTWVPLYQPSSGLQSQTEQQYPTGTQTS
GSSQTSTQTRPYNPLPASSCSGESSLYKKCNTNPCPPASKPVRDVQCSSHNSHPFMGRLY
EWEPFNEVPEDQLCELNCRAIGYRFYVRLSERVIDGTPCGQNETSICVAGKCQSPGCDEF
LGSGKEMDKCGVCGGDNTACKLVSGMFQHSLSKVGYHKIVEIPEGATKINVTEMVKSQNY
LALRSRAGRSIINGNWAIDRPGKYEGGGTMFTYRRPNEISSTAGESFLAEGPTNEVLDVY
MIYQQPNPGVHYEYILPSENSVLQGSADDAGNTVTSETGYDQYGRPSQEGYEQGGGHRYP
PHTPDNQVPAAQPPRRQREHNWKLIGTTDCSASCGRGSRYTVFGCVHRITHDRVSDTLCD
SSTKPSAQEEPCNVQPCPAFWDIGEWSECSKTCGLGMQHRQILCRQVYANRTLNVQSSRC
RHLERPESSGTCQMKICSEWQIRSEWSPCSVPCGVGQRSREVRCVSNVGDFVEDEECNMK
LRPSDAENCDMGPCAKSWFHTDWANRCSAECGMGVRSRSVVCLINHISSLPLEGCGSERP
PEVQACNNGPCESRTEWFTGPWGQVSKGQLLKCENTYSTVVLNTYTLQL
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgagcagaagagtctccatggtgagtttcgccatggttatggccctgctttggtcaatc
cccactgactgtcagctcccagcaaaccacaagaaggtttctcctaggtcagaatcccag
ccgggagttaatgatgacgtccctcaggggtcgtggggctcctggggcccatggggtgaa
tgttcccgctcctgtggtgggggggtccaccagcaaacgaggccgtgcctcccaaccgtc
acccctctagctgcagcatacactcccagacaggctcctcatgtggggcaccaggaaccg
ggacacgtggaatcagccttgaggccctctgtgccagtgcatcgcgggaatacacacctc
accagccgtgggcagcctaggaagcagcagaatgaagtacgacctgggcgacggcggagc
agcagccgcatcactcctggaatgtacggctacgggaagatgccgtatgtgatgtcctca
cagagcgaccaaaatatacacaccaacctgcaccagtatcgccccccatccgactacaga
caccacagctacagacgacagcagcagcagcagcagctgaacaacagaaatactcaccaa
atcacccaccacaactctcaccacaacaccaaccagcagacctgggttcctttatatcag
cccagctctggccttcagagtcaaaccgagcagcagtatcctactggcactcagacgtca
gggtccagccaaacgtccactcagaccagaccctacaaccccctgccagcttcctcctgc
tccggagagtccagcctgtacaagaagtgcaacacaaatccctgtcctccagccagtaag
cctgtcagagacgtccagtgttcctcccataacagccacccgtttatgggccgactctac
gaatgggaacctttcaatgaggttcctgaagatcagctgtgtgagctaaactgccgggcg
attgggtaccgcttctacgtccggctgtcagagcgggtcatcgatgggactccatgtgga
cagaatgagacgtccatctgtgtggctgggaaatgtcagagtcctggctgtgatgagttc
ctgggctcggggaaggagatggataagtgtggggtgtgtggaggggataacaccgcctgc
aagctggtctctggcatgttccagcacagcctgtccaaagtgggctaccacaagatcgtg
gagattccagagggagctaccaagatcaacgtcaccgagatggtcaagagccagaactac
cttgccctgcggagccgtgctggacgatccatcataaacggaaactgggccatcgaccgg
ccaggaaagtacgagggaggggggaccatgttcacataccggcggcccaatgaaatcagc
agcacagctggagagtcctttctggcagaggggccgaccaatgaagtcctggacgtctat
atgatctaccagcagcccaatcctggagtgcattatgaatacatccttccatcagaaaac
tcagttttgcagggcagtgcagatgatgcaggtaacacagtgaccagtgaaacaggatat
gatcagtacggtcggccgtctcaggaaggatacgaacaaggaggaggacacaggtaccct
cctcacacacccgacaaccaggtacctgcagcccagcccccacgcagacagagagagcat
aactggaaacttattggaacaactgactgcagcgcctcctgtggtagaggtagcaggtat
actgtgtttggctgtgttcaccgcatcactcacgaccgtgtgtcggacactctgtgtgac
agcagtaccaagcccagcgctcaggaggagccctgcaacgtccagccatgccctgcattt
tgggatattggcgagtggtcagagtgcagtaagacgtgtggcctcggcatgcagcaccgt
cagatcctctgccgccaggtttacgccaaccgcaccctcaacgtgcagtccagccgctgc
cgccacctcgagcgccccgagagtagcggcacctgccaaatgaagatctgcagcgagtgg
cagatccgctccgagtggagcccttgctcggtgccctgtggggtgggtcagaggtcgcgg
gaggtgcgctgcgtcagtaacgtgggtgattttgtggaggatgaggagtgtaacatgaag
cttcgtcccagcgatgcggagaactgtgacatgggaccgtgtgcaaagagctggttccac
acagactgggccaacagatgctctgcagagtgtgggatgggtgtacggagtcgtagtgtg
gtttgtcttattaaccacatcagcagtctgcctctagaaggctgtgggtcagagcgcccc
ccagaggttcaggcctgcaacaacgggccctgtgagagccgcactgagtggttcactggg
ccgtggggtcaggtgagcaaaggacagcttctgaaatgtgaaaatacatattcaactgta
gttttgaatacatacacactacagttgtga
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