Astyanax mexicanus (Mexican tetra): 103026726
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Entry
103026726 CDS
T05042
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103026726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amex03000
]
103026726
03019 Messenger RNA biogenesis [BR:
amex03019
]
103026726
04121 Ubiquitin system [BR:
amex04121
]
103026726
Enzymes [BR:
amex01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103026726
Transcription factors [BR:
amex03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
103026726
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103026726
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103026726
Ubiquitin system [BR:
amex04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103026726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
Med7
Nup35_RRM_2
DZR_2
RDD1
zf-CCCH_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
103026726
NCBI-ProteinID:
XP_007252896
Ensembl:
ENSAMXG00000001373
UniProt:
A0A8B9KYC3
A0A3B1JJE5
LinkDB
All DBs
Position
24:complement(40558684..40570148)
Genome browser
AA seq
790 aa
AA seq
DB search
MSRSPELKEDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYVRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKMNPNFLQTSTCGGEKSKSKTNATQRPNSSNKEGWPLLQGYGKLVNGLPTEHRKS
PPLLDCLTDSDHLTPDEPDPELGADQSTGLPPFPSALEPSSPVDKSTEPVSIGNGENIPQ
VPSSDSPSPPPGLSKPSLVVPISVADLTARSPFEGAAAESQSLFSDNSNFRHPNPIPSSL
PSFPSSPQGGSDWPMTPEPQSLFASDTIPVASSTDWQAAFGFGSSAKQQQQDDDLGFDPF
DVTRKALADLIEKELSVQEVSPCSPTLPLHQPGLHNGQQRFPQLQHRGLYNSFSLPPHTA
SRHPWMGLPTRNNLTHLNHAVSAAAAHSHFLEVSGPPQHHNTGLGGIPISENNSVENINV
KEWQDGLRALLPNININFGGLPNSTSSSSSSSSTSSVNHIGAPPGSAGLSHSLSWDGTAS
WMDPAIITGTTHWSSRISGSNREESIPASAGSSLDCLQDDNPPHWLKSLHALTEMDGPGS
SVAAPQPQHTGLLDAAAQLSLHRAGWAPYLPAPTLAPSQFHSPPPGFQTAFRPPAQTATD
ILQSAGMDRH
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgtagtcccgaactgaaggaagaccccatggagtgccctctgtgcatggaacca
cttgagattgacgatgtcaactttttcccgtgcacctgcggctaccaaatctgccgtttc
tgctggcaccgcatccggacagatgagaatggcctctgcccagcctgcagaaagccatac
ccagaggacccggctgtgtacaaacctttgtcacaggaggagatccaaaggataaagaat
gagaagaagcagaagcagaatgagaagaagcaaaaggtgactgagaatcgtaagcacctt
gccagtgtccgtgtggtccagcggaacctagtgtttgtggtgggactttcgcagaggctt
gcagacccggaggtacttaagaggcctgagtattttggaaagttcggcaaaatacataaa
gtggtcatcaacaatagtacgtcgtatgcaggctcacagggtcctagtgccagtgcctat
gttacttacgtccgctcagaggatgccctaagagcaatacagtgtgtcaacaatgtggta
gtggatggtagaacacttaaggcttctttaggtacaacaaagtactgcagctattttctg
aaaagcatgcagtgccccaagccagactgtatgtatctacatgaactgggagatgaggca
gctagtttcactaaagaggaaatgcaggctgggaaacaccaggagtacgagcaaaaacta
ctccaagatctttacaaaatgaatcccaattttctacaaacttcaacatgcggaggggag
aaatcaaaaagcaaaacaaatgctacacaaagaccaaacagtagcaataaagagggttgg
cccttgttacagggctatggaaaactagttaacggtttacccacagaacaccgcaagtcc
ccacctcttttagactgcctaacagactccgatcacttgactccagatgaaccagaccct
gaactgggagcagatcagagcacaggccttccaccctttccctcagccttagagccaagc
agtcctgttgataaatcaacagaacctgtaagcatagggaatggggagaatataccacag
gtcccaagtagtgactcaccctcccctcctcctggtctttctaagccaagcctggtggtg
cccatcagtgtcgctgacttaacagcccgctccccctttgagggggcggctgcagagtct
cagtcgctcttttcagacaacagtaacttcagacaccccaacccaatccccagcagcctg
ccctctttccccagctccccacaggggggcagtgactggcccatgacccctgagccacaa
agcctttttgcctcagacaccatcccagtcgcctcctccactgactggcaagcagccttc
ggttttggctcttcggccaagcagcagcaacaggatgatgacctgggctttgaccccttc
gacgtgaccaggaaagccctagctgaccttatcgagaaggagctgtctgttcaggaggtt
tcaccctgctctcccactctcccgcttcaccagcccggcctccacaatggacagcagcgc
ttccctcagctgcagcacagaggcctctacaactccttcagtctgcccccacacacagcc
tcgcgccacccctggatgggtctccccacccgcaataacctcacacacttgaaccacgcg
gttagtgcagctgctgcacacagccactttctagaggtcagcggcccaccacagcaccac
aacacaggcctcggggggatacctatatcagaaaacaactcagtggaaaacataaatgtg
aaagaatggcaggacggcttaagagcactcctgccaaatatcaacatcaacttcggaggc
ctcccaaactctacctcctcttcatcctcctcttcgtccacttccagcgtaaaccacatt
ggtgcaccacctgggtcggcagggctctcacacagcctcagttgggatggcacagccagc
tggatggatcccgccatcatcaccggtacgactcactggtcctccagaatctcgggcagc
aatcgggaagaaagtatccctgcgtccgcaggtagcagtttggactgtctccaagacgac
aacccgccacactggctcaagtctctgcatgctctgacagagatggacggaccgggcagt
tcagtggccgcgccccagcctcagcacacaggcctgctggatgcagcagcccaactttcg
ctgcacagagccggttgggcaccctaccttcccgctcccacactcgcccccagtcagttc
cactctccaccaccaggcttccagacagcctttagacctccagcgcagaccgctacagac
atcctacagagcgccggcatggaccgccactag
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