Astyanax mexicanus (Mexican tetra): 103027232
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Entry
103027232 CDS
T05042
Symbol
sh3rf1
Name
(RefSeq) E3 ubiquitin-protein ligase SH3RF1 isoform X1
KO
K12171
E3 ubiquitin-protein ligase SH3RF [EC:
2.3.2.27
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
amex01009
]
103027232 (sh3rf1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
amex04121
]
103027232 (sh3rf1)
Enzymes [BR:
amex01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103027232 (sh3rf1)
Protein phosphatases and associated proteins [BR:
amex01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
103027232 (sh3rf1)
Ubiquitin system [BR:
amex04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103027232 (sh3rf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH3_1
SH3_9
SH3_2
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
zf-RING_4
zf-RING_11
Prok-RING_4
zf-Nse
Motif
Other DBs
NCBI-GeneID:
103027232
NCBI-ProteinID:
XP_007255290
Ensembl:
ENSAMXG00000010891
UniProt:
A0A8B9LE76
LinkDB
All DBs
Position
3:complement(67352889..67415892)
Genome browser
AA seq
884 aa
AA seq
DB search
MDESALLDLLECPVCLERLDATAKVLPCQHTFCRRCLLGIVGSRGELRCPECRTLVESGV
DELPSNILLVRLLDGIKQRPRRAGAGPVAAAAAVTNGSAGGGVRNQGAGGGGQRDQTNPG
VQPQRVQTKSTPVRGVPQLPCAKALYNYDGKEPGDLKFTKGDIIILRRQVDENWYHGEMG
GVHGFFPTSFVQVIKPLPQPPPQCKALYDFELKDKEADKDCLPFSKDDILTVIRRVDQNW
AEGMLGDKIGIFPISYVEFNTAARLLIELDKVPDSGSDSGEGASSSASGPQANGVQKTAG
EKKNSKKRHSFTSLTMSHKPCLAPPPQRHSMEISGPVLISSSNPTAAARIGELSGGLSSS
APSQVHICTSGLIVTPPPSSPVTTATVFTFPPETSYASIPVDVLPPPPPPPPQSSAVGAA
SGLAAGQRPSPTASDQSGRQRPTVYVAMFPYTPRKEDELELRKGEMFLVLERCQDGWFKG
TSMHTGKIGVFPGNYMSPVSRTAASSSQPKVPLTLCSQAGRSVTIVSPSSAQLGPSQSGI
DPSKSIPICTGPAPSSPLPAAIVTAAHMPPGQHPKVLMHVTSQMTVNQARNAVRTGVCHN
QDRPTAAVTPIQSQNPLPFLPHLAVCPQLSPSPGSVPTSNPASRMGVAMGCAAASLTPPN
VSAASLEVDTLRPAAMVALPVAPGNAKPMGATAANQTAACRLDKDCKREKKGLLKLLSNK
KKLRPSPPSSPTLEAEQAATADVTQGAMGPELPIPASAVGASGSQARTGSCPVESETSLS
CSSSSSNTDAAHRRSGSQDNPAPIAPPPRQACSSLLSMQHDGRPIVCERYRVVVSYPPQS
EAELELKEGDIVFVHKKREDGWFKGTLQRNGRTGLFPGSFVDSI
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atggacgagtcggctcttctggacctcctggagtgcccagtatgcttggagcggctagat
gccacggccaaggtgctgccgtgccagcatacgttttgccgccgctgcctgctgggcatt
gtgggctcgcgcggggagctccgctgtccagagtgccgcacacttgtggagagcggcgtg
gatgagttgcctagcaacattttgctggtacgtctgctggatggcatcaagcagcggccc
aggcgggcgggggcaggaccggtggcagcggcagcagctgtgaccaacggctcagcgggt
gggggagtgagaaaccagggggccggcggaggaggacagagggatcagacaaacccagga
gtgcagccccaaagagtccagaccaagagcactccagtcagaggggtgcctcagctccct
tgtgccaaggccttatacaactatgacggcaaagaaccaggtgacctcaagttcactaag
ggtgacatcattatcctgcgccggcaggtggatgaaaactggtaccatggagaaatgggc
ggggtccacggattcttcccaaccagctttgtgcaggtgatcaaacctctgccccagcct
cccccacagtgcaaagctctgtacgactttgaactgaaagacaaggaggcagacaaggac
tgcctgcccttctcaaaggatgacattttgacagtgattcggcgggttgaccagaactgg
gctgaaggaatgctgggagataagattggcatctttcctatatcatatgtagagtttaac
acagcagcgcggctgcttattgagctggacaaggtgccagacagtggcagcgattccggt
gaaggagcttcttcgtctgcgtcgggaccacaggctaatggtgtgcagaagactgcagga
gagaagaagaacagcaaaaagcgccactcgtttacgtctctgaccatgtcccataagcca
tgcctggctccgccgccacagaggcactccatggagattagtggccctgtgctcatcagc
tcctccaatcctacagcagcagctcgcatcggggagctcagtggaggattgtcctccagt
gccccgtcccaagttcacatttgcacgtcaggcctcattgtcactcctcctccgagcagc
cctgtaactacggcaaccgtcttcactttccccccagagaccagctacgcctcaatccca
gtggatgtgctgcctcctcctccaccgcctcccccacagtcttctgctgtcggcgctgcc
tctggattggccgctggacagaggccttcccccacagcgagtgaccagagtgggcgccag
aggccgacagtgtatgtggcaatgttcccatacactccccgtaaggaggatgagctagag
ctaaggaaaggagagatgttcctggtactggaacgctgtcaggatggctggtttaaggga
acatccatgcacaccggcaagatcggagtgtttcctggcaactacatgagtcctgtcagc
aggacggcagcaagcagcagtcagcctaaagtacccctaacactgtgctctcaagccggg
cgcagcgtcaccatcgttagcccctcctctgcccaactcggaccttcccagagtggcata
gaccccagcaagtccattccaatttgtacaggtcctgctccttctagccctctaccggca
gccatagtgactgcggctcacatgcctcctggtcagcatcctaaagtgctgatgcatgtg
acttcacagatgactgtcaatcaagctcggaatgctgtaaggacaggagtctgtcacaac
caagatcgccctactgctgctgtaacacccatccagtcccagaatcccttgcctttcctt
cctcacttggcagtgtgtccacagctttcacccagccccggatcagtccccacctctaac
cctgcctcacgaatgggtgtggctatgggctgtgctgccgcctccctcaccccacccaac
gtcagtgctgcttcactggaggttgataccttgagacccgctgccatggtagcactccca
gttgcccctggtaatgccaaacccatgggtgccacagcagcaaatcagacggctgcctgt
agactggacaaggactgcaagagggagaagaaaggtctgctgaaactgctttcgaacaaa
aagaagctgcggccctctcccccatcctccccaacgctggaggccgaacaggcagctact
gcagacgtgacacagggtgccatggggcctgaattgcccattcctgcctctgcagtgggg
gccagtggaagccaagctagaactgggtcctgtccagtagagtctgagacatctttgtca
tgttcatcatcatcatcgaacactgatgcagcacaccgcaggagtggatcccaggacaac
cctgcccccattgcaccaccgccacggcaagcatgctcctccctcctatccatgcagcat
gacggccggccaattgtgtgcgagaggtaccgtgtggtagtgtcataccctccacagagc
gaggctgagctggagctgaaagagggagacatagtgtttgtgcacaagaagcgtgaggac
ggctggttcaaaggaactctccagaggaacggtcggacgggcctctttcccggcagcttt
gttgacagcatctga
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