Astyanax mexicanus (Mexican tetra): 103028809
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Entry
103028809 CDS
T05042
Name
(RefSeq) collectin-12-like
KO
K10062
collectin sub-family member 12
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
103028809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
amex04131
]
103028809
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
amex04091
]
103028809
Membrane trafficking [BR:
amex04131
]
Endocytosis
Phagocytosis
Opsonins
103028809
Lectins [BR:
amex04091
]
C-Type lectins
Group 2: Type II membrane receptors (Asialoglycprotien and DC receptors)
Scavenger receptor with a CTLD (SRCL)
103028809
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Lectin_C
Filament
KASH_CCD
KxDL
PhageMin_Tail
DUF1664
MPS2
GAS
DUF6468
Crescentin
Motif
Other DBs
NCBI-GeneID:
103028809
NCBI-ProteinID:
XP_007235353
Ensembl:
ENSAMXG00000013281
UniProt:
W5L1G1
LinkDB
All DBs
Position
16:complement(12618151..12703278)
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AA seq
751 aa
AA seq
DB search
MKDDFNDEEEVQSFGYKRFGIQEGNECTKCKNDWALRAAIALLYVLCALLTIAVAVLGYK
VVQKMDNVTEGMENYGGKIMAVETDLKKLDDQTGEKSENATSEILSFKTEIQTLQNQLNN
IALTASSNRAALDDLRLVGEDMQSGHVSLRDLLESNANTIRNVNRTLNAYSNLIGGLKTD
TERLQSELQTQTREQSRSAHSLNSLNFTQSQQRNVIGSLQRSVEDASQAVQKLKNDYQSL
QQMARQTKADADWLREKVQNLQAVAANNSALTRSNSDAIEDVTSQLSSLSEQVQNASTIT
DSHDQSLRELMDQQRDHDNSTTSKFDTMEARLDQNEEHMDRITGNVSFATQLLGAISSDL
NGLRGCAETVTRHTDLLLSLNTSVLEAKADNSELKAQQDELAARLDKEVTSLSIVMEEMK
LVDSKHSQLITNFTILQGPPGPRGPRGDRGATGPAGKAGEKGESGERGPPGVPGPKGDKG
LHGIPGVPGSKGPPGPRGNPGSKGSRGSGGRAGPPGERGDPGLPGLAGRDGQPGPQGPQG
PQGLRGLAGPPGPQGPPGPAGPIGPPGPPGPSGPLTGPPPGPPPEVIKPVPPVVPQGSVS
RQVQEPETPSTTPGCPSQWKSYRDKCYYLSAPSERLNFEETKETCKNKTSSMLIINDEDE
QQWVRKQIAGKGYFWLGLTDIAEENIWRWVDGTLTTFTKWKPGQPDNWSHGHEEGEDCAG
LIHEANWNDFFCTDRIGFICERTNERQAPVL
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacgacttcaacgatgaggaggaagtgcagtcctttggctacaagaggtttggt
atccaagaggggaatgaatgcactaagtgtaagaacgactgggcattgagggcggccatc
gctctcctgtacgtcctgtgtgctttgcttactatagccgtggctgtcttaggatacaaa
gtggtccagaagatggataatgtgacagaggggatggagaactacgggggtaaaatcatg
gctgtagaaacagacttaaaaaagcttgatgaccagacaggagagaagtcagagaatgca
acaagtgaaatcctgtccttcaagacagaaattcagacattacagaaccagctaaacaac
atcgctctgacagcgtccagcaacagggcagctctggacgacctacggcttgtaggagag
gacatgcagagcggccatgtttccctgagggaccttctggagagcaacgccaacaccatc
cgcaatgtcaaccgcaccctcaacgcatacagcaacctgattggcgggctgaagacggac
acggagcgtcttcaatcagaacttcaaacgcagacgagggagcagagccgctctgcccac
agcctcaattccctcaatttcactcagagccagcagaggaacgtcattggctccctccag
aggtcagtagaggatgccagccaggcagttcaaaagctgaagaacgactaccagagcctg
cagcaaatggccaggcagaccaaggcggatgccgactggctcagggagaaggtgcagaat
ctccaggctgtggcagccaacaactccgccttgacccgttccaacagcgatgctatcgaa
gacgtgacctctcagctcagttcactgtccgaacaggtccagaacgcctcaactatcact
gacagtcacgaccagagcctgcgtgagctcatggaccagcagagagaccacgacaactcc
accaccagcaagtttgacacgatggaggcccgtctggaccaaaacgaggaacacatggac
cgcatcacaggcaatgtcagcttcgccacgcagctcctgggagcaatcagtagcgacctg
aacggcctccgcggctgtgctgagacggtcaccaggcacacggaccttctgctgtccctc
aacaccagcgttctggaggccaaggctgataacagcgagcttaaagcccagcaggatgag
cttgctgccaggcttgataaggaagtgaccagcctgtccattgtgatggaggagatgaaa
ctggtggatagcaaacactcgcagctcatcactaacttcacaatccttcaaggcccacca
ggtcccagaggtccaaggggagacaggggagccacgggtcctgcaggaaaagcaggtgag
aaaggagaatctggagaaagaggtccaccaggagtgccaggaccaaaaggagacaaagga
ctgcatggaattccaggagtccccggctccaaaggtccacctggaccaagaggaaatcct
gggtcaaagggctccagaggatcaggaggaagggctgggcctccaggggagaggggtgac
cctggtttacctgggctggctggcagagatggtcagccaggccctcagggcccacagggg
ccacaaggactcagagggctggcaggacctccaggtccacagggacctccaggccctgcg
ggccccattggtccgcctgggccacctggaccatctggaccactgactggacctccgccc
ggacctccacccgaagttattaaacctgtgcctcctgtagtaccacaaggctcagtgtcc
cgccaagtacaagagcctgaaacccctagtaccacaccaggatgtccctctcaatggaag
agctacagagacaaatgctactacctttctgctccctcagagagactaaatttcgaagaa
acaaaagaaacttgcaaaaataagacctcttctatgctcattatcaatgatgaggatgaa
cagcaatgggtacggaaacaaattgcaggaaagggttacttctggctgggacttacagat
atcgcagaggagaatatctggagatgggtcgacgggacccttaccacttttacgaagtgg
aaaccaggccagcctgataactggagccatggtcatgaagagggcgaggactgcgcaggg
ctgatccatgaggccaactggaacgacttcttctgcacagatcgcatcggcttcatctgt
gaacgtacaaacgagagacaagctccggttttatag
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