Astyanax mexicanus (Mexican tetra): 103038688
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Entry
103038688 CDS
T05042
Symbol
papd7
Name
(RefSeq) non-canonical poly(A) RNA polymerase PAPD7
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103038688 (papd7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103038688 (papd7)
03016 Transfer RNA biogenesis [BR:
amex03016
]
103038688 (papd7)
Enzymes [BR:
amex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
103038688 (papd7)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
103038688 (papd7)
Transfer RNA biogenesis [BR:
amex03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
103038688 (papd7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_assoc
NTP_transf_2
TUTase
Polbeta
PAP_NTPase
Motif
Other DBs
NCBI-GeneID:
103038688
NCBI-ProteinID:
XP_022538847
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All DBs
Position
23:complement(16551186..16590455)
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AA seq
829 aa
AA seq
DB search
MDPRVAWIQPEQKGPANALWMRVWETSQGIRPGSGNNHHQHHHHHHHHHHHHLHHHHYGR
LHGKNAAPARDACNVNAIDPLALSSSSSSFSSSAAVTTVNTAVNSSSTAAHPHHHQHHHH
SNANGAAITGAAILSNDISNDIKSLTKTGENGDGKTSSAPSPSAQTSTDSPSLSSSSTLR
TNEVSSTANTGNMNQNSGSSSASFLLNFHENMLNSFNVNTNQHHHYQQHPPHQHPHHNPP
PLLPPHSRHSQQEQRQYAATAQQDSIKRHQYHHPTGLSNHLHHHPGRRKSDNKASTYGFN
CLLSDCTNGNHVNSGTPWKTRSYSPGVNGLHEEIIDFYNFMSPRPEEATMRQEVVDRIES
VIKEQWPSADVQIFGSFSTGLYLPTSDIDLVVFGKWERPPLQQLEQALRKNNVAEPYSIK
VLDKATVPIIKLTDQETEVKVDISFNVETGVKAARFIKDYVKKYTVLPYLIFVLKQFLLQ
RDLNEVFTGGISSYSLILMVISFLQLHPRFDPRIPNTNLGVLLIEFFELYGRNFNYLQTG
IRIKNGGAYMAKEDIMKAMSNGYRPSMLCIEDPLLPGNDVGRSSYGAMHVKHVFDYAYIV
LGNAVSPLANSYPNKDSDSTLGRIIKVTQEVIDYREWIVQKWGSKQVSRPERNGGPVHKD
SVDQAEHGTLLGVGVGAEEPPQRDSVSPNSADSPMSLSSPQQQSSASSLSGSDIDSDCTP
SAAPAVTPYPLQTLALGTLPTDLQMGTIKANLSMPLTMPPTNQVRVSMAGNLPIHVLPGR
QAGPKFPLKGFHNPAVVHSPSLANRNHLQYNRNPGRRRKRDSLPASVSR
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggatccgagggtcgcctggattcagccggagcagaagggacctgccaacgcgctgtgg
atgcgtgtgtgggaaacctctcagggaatccggcccggctccggcaacaaccaccaccaa
caccaccatcaccatcatcaccaccaccaccatcatcttcatcaccaccactacggccgc
ctgcacgggaaaaacgcagcaccggccagagacgcgtgtaacgtgaacgctatcgaccct
ttggccctttcttcttcttcttcttctttttcttcttctgctgctgttactactgttaat
accgctgttaactcctccagcactgctgctcatccccaccaccatcagcaccaccaccat
agcaatgctaacggcgccgcgattaccggtgcggcgatattatcgaacgatatcagcaac
gatatcaagtcactaactaaaaccggggagaatggggacggcaagacttcctcagcacct
tctccctctgcacaaaccagtacggatagcccttctttatccagctcctctacactaagg
actaacgaagtgtcctccaccgccaacactggaaacatgaaccagaactccgggagctcc
agcgccagctttttgctcaactttcatgagaacatgttaaacagttttaatgtcaacacc
aaccagcaccatcactaccaacaacatcctcctcatcaacatcctcatcataatcctcct
cctcttcttcctcctcattcgcggcattcccagcaggaacagcggcagtacgctgccacc
gcccagcaggactccatcaagcgccaccagtaccaccaccccacaggcctcagcaatcac
ctccaccatcaccccgggcggaggaaaagtgacaacaaggccagcacttatggcttcaac
tgcttactgtccgactgtactaatggaaaccatgtgaactctggcacaccgtggaagacc
aggtcgtacagcccaggagtcaacgggcttcacgaggagattatagacttctacaacttc
atgtcccctcggcctgaagaggccaccatgagacaagaggtggtggaccgaatagaatct
gtcatcaaggagcagtggccaagtgctgacgttcagatatttggcagctttagcactgga
ctctacctccccaccagtgacattgacctggtggtgttcgggaagtgggagagaccccct
ttacagcagctggagcaggccctccgaaaaaacaacgtggcagagccgtactccatcaaa
gtactcgacaaagctacggtaccaattatcaaactgacagaccaggaaaccgaggtgaaa
gtggacatcagcttcaacgtggagactggggtcaaagccgcccgcttcattaaagattat
gtgaagaagtacaccgtgctgccttacttgatcttcgttctgaagcagttcctcctgcag
agagacctgaatgaagtctttacaggaggcatcagctcctacagcctcatcctgatggtt
atcagctttctgcagctacacccacgatttgatccccggattccaaacacaaacctgggt
gttctgctcattgagttcttcgagctgtacggcagaaattttaactacctgcaaacaggc
atcaggataaagaacggcggtgcgtacatggctaaagaagacattatgaaggccatgagc
aacggctacagaccctccatgctctgcatagaggaccctctgcttccaggtaacgacgtg
ggcaggagttcatatggagccatgcatgtgaagcatgtttttgactatgcctacatcgtc
ctcggcaatgcggtgtctcctctcgccaactcctatcccaacaaagacagtgacagcact
ttgggacgcatcattaaggtcacgcaggaggtgatcgactacagggagtggatcgttcag
aagtggggcagcaagcaggtttcccgtcccgagagaaacggtggtccagttcataaagac
tctgtggaccaggctgaacacggcactctgctgggtgtaggtgtgggtgcagaagagcct
ccccagagggactctgtctctccaaacagcgcagactcccctatgtctctgtccagcccc
cagcagcagtcctctgcctcctcactgtccggcagtgatatcgactctgactgcacaccc
tctgcggctccagctgtgacaccctatcctctgcagacgctggccctgggcacgctgcct
actgacctgcagatgggcacgatcaaagctaacctcagcatgccactcacaatgccaccg
accaaccaagtaagagtatcgatggcagggaatcttcctatccacgtcttaccaggcaga
caggcaggtcctaagttccccctaaagggcttccacaaccctgcagtggtgcacagccca
agcctggccaaccgcaaccacttgcagtacaaccgtaacccaggccgccgccggaagagg
gacagtttaccggccagcgtcagcagataa
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