Aminobacter sp. MSH1: CO731_03168
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Entry
CO731_03168 CDS
T05420
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
amih
Aminobacter sp. MSH1
Pathway
amih03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
amih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CO731_03168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amih03400
]
CO731_03168
Enzymes [BR:
amih01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CO731_03168
DNA repair and recombination proteins [BR:
amih03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CO731_03168
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AWC23696
UniProt:
A0A2S0XKV6
LinkDB
All DBs
Position
complement(3198742..3199203)
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AA seq
153 aa
AA seq
DB search
MKTRRRSAFIIPCIPTLVDKPPEGDRWTHEIKYDGYRTQIHLAGGHARAFTRNGHDWSMK
YAAVLAASRELITRDVILDGEMVVQDESGRSSFKQLASAIRWDGSSLVFYAFDLLALDGN
DLTKQRCEDRRSRLHELMGDPASHLRSTVQPGV
NT seq
462 nt
NT seq
+upstream
nt +downstream
nt
atgaagacccggcgtcggtccgcgttcataattccctgcatcccgacgctggtagacaag
ccgccagagggcgaccgctggacccacgaaatcaaatatgatggctaccggacgcagatc
catctggccggcggtcacgctcgtgccttcacccgcaatggccatgactggtcaatgaag
tatgcggcggtgctggcggcgtcgcgcgagttgatcacgcgcgatgtaatcctcgacggc
gaaatggtcgtgcaggatgaaagcggccgctccagcttcaagcagcttgcgagcgccata
cgctgggatggctccagcctggtgttctacgccttcgacctccttgccctcgacggcaac
gacctgaccaagcaacgctgcgaggatcgacggtcacgcttgcacgagctcatgggcgat
ccggcgtcccacttgcgctctacagttcagccaggcgtttga
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