Advenella mimigardefordensis: MIM_c08890
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Entry
MIM_c08890 CDS
T03016
Symbol
xth
Name
(GenBank) exodeoxyribonuclease 3
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
amim
Advenella mimigardefordensis
Pathway
amim03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
amim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MIM_c08890 (xth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amim03400
]
MIM_c08890 (xth)
Enzymes [BR:
amim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
MIM_c08890 (xth)
DNA repair and recombination proteins [BR:
amim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
MIM_c08890 (xth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Phage_term_smal
Motif
Other DBs
NCBI-ProteinID:
AHG62988
UniProt:
W0PD69
LinkDB
All DBs
Position
complement(998955..999512)
Genome browser
AA seq
185 aa
AA seq
DB search
MACDEFDREGRILRADFKDLTIISAYLPSGSSGEERQAAKFRFLDHFGPWVDAMMEDHRK
TGHNYIICGDWNIAHKEIDLKNWKGNLKNSGFTPEERAWISDVFDRRGFVDVFRKINEEP
DQYTWWSNRGQAWAKNVGWRIDYQIATPGIAEKAIATSIYKDERFSDHAPLTIDYDWKLE
PVARD
NT seq
558 nt
NT seq
+upstream
nt +downstream
nt
atggcttgcgatgagtttgatcgtgaaggccggattctgcgcgcagacttcaaggacctg
accatcatcagtgcgtatctgccttcgggttccagcggtgaggagcggcaggccgccaaa
ttccgttttctggatcatttcgggccctgggttgacgccatgatggaagatcaccgaaaa
accggtcataactacatcatctgcggcgactggaatatcgcgcacaaagaaatcgacctg
aagaactggaaaggcaatcttaaaaactccggtttcacaccagaggagcgtgcctggatt
tcagatgtgtttgaccgccgcggcttcgtcgacgtttttcgcaagatcaacgaagaaccg
gaccaatacacatggtggagtaatcgcggtcaggcctgggccaagaacgtaggctggcgt
attgattaccagattgccacgccgggcattgccgaaaaggccatcgccacctccatctac
aaggacgaacgcttctcggatcacgccccgctcaccatcgattatgactggaagctggaa
ccggtagcccgggactaa
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