Advenella mimigardefordensis: MIM_c30320
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Entry
MIM_c30320 CDS
T03016
Name
(GenBank) putative DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
amim
Advenella mimigardefordensis
Pathway
amim03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
amim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MIM_c30320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amim03400
]
MIM_c30320
Enzymes [BR:
amim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MIM_c30320
DNA repair and recombination proteins [BR:
amim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MIM_c30320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
HC2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AHG65096
UniProt:
W0PE80
LinkDB
All DBs
Position
complement(3447845..3450514)
Genome browser
AA seq
889 aa
AA seq
DB search
MSLADYQRKRRFDRTPEPQENAIGGGRPVFVVQLHHASHRHYDFRLQMAGVLKSWAVPKG
PSLDPSVKRLAVEVEDHPVSYARFEGDIPKGEYGGGHVRIFDSGIWSTSEDAEKQLAKGH
LTFELFGDILQGGWHLIRSHRRTSQRQWLLIKQDDAFASNREADDFVDEAAQRGTHGAMN
TRQTYAGKRPATGKVTKGITSKGVTSKGVTSKVTASKGATSKGATSKGATSKGAASKGAA
SKGAASKASASKAVTTTTDANRRRNPATTTWRAQLDAFKGATRQTLLHKPFAPQLCEPAD
KAPVGDDWLHEVKWDGYRLLCTIVDGVPALWSRNGLDWTARLPDVARDMALLGLQQAAFD
GELVVLNGVRSDFSALQATLSGEQQAPLSYLLFDLIHLEGLDLCDVPLQDRKALLQTLLQ
DAPSRLRYSSHLVGSGPDVFKQVTAEKLEGIISKRINAPYRAGRSRSWQKIKMELSDEFA
IAGFIEPKGSRTGIGSLLLAVPQGRTGWRLAGRVGTGMNDAMLRQLSAMLRPQAVTAPTV
TVADIDSDLRRAKWVRPRQVVEVFYRGYSSQGLLRHTAFRALREDKSVADLRGSPAQEEP
MKKEIVHISSPDRLVYPELGVSKQDVADYYERVMDWLLPGLIGRPLAVLRCPDGTQNACF
FQKHHTAGMDVSTVNLQEEQGGRQNYLMVRDKTDVMQLVQFNALEFHPWGAQADSPDHCD
RLVFDLDPSAEVPWNKVKQAARQVRDLLAQLQLQSFVRTTGGKGLHVVAPLNPPAPWDDA
RQFARAFAESLAGAHPDTYIATASKKRRKGLIFVDYLRNGRGATSVCSYSLRARPGAAVA
TPLRWEELGRVKSSDAFTIRNVLQRLARLADDPWQALTRIRQSLPDLAE
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgagccttgccgattatcagcgcaaacgccggttcgaccgaacgccggaaccgcaggaa
aacgcgattggcggcggccggcctgtctttgttgtccagctgcatcatgccagccatcgt
cattatgattttcgcctgcagatggccggcgtgctcaagagctgggccgtgcccaagggc
cccagccttgatccttctgtcaaacgcctggcggtggaagtggaggatcacccggtcagc
tatgcccgtttcgagggtgatatacccaaaggcgaatacggtggcggtcatgtcaggata
ttcgacagcggtatctggagcaccagcgaagacgccgaaaagcagctggcaaaggggcat
ttgacgtttgaactgttcggcgacatattacagggcggatggcatctgatccgaagtcat
cgccgaaccagtcagcgccagtggttattgatcaaacaggacgatgcctttgccagcaat
cgggaggcggatgattttgttgatgaggcggcacagcgtggtactcacggcgcgatgaat
acccggcagacgtatgcaggcaagagacctgcaaccggtaaagtcaccaaaggaatcacc
tcgaaaggcgtcacgtcaaagggagtgacgtcaaaagtcacagcgtcaaaaggagcaacg
tcaaaaggtgcaacgtcaaaaggtgcaacgtcaaaaggtgcagcatcaaaaggtgcagca
tcaaaaggtgcagcatctaaagcctcagcatcaaaagccgtcaccaccactaccgacgcg
aaccgacggcgcaatccagcgacgacgacatggcgtgcgcagctggacgccttcaaagga
gcaacccgacagacgttgctgcacaagccatttgcgccgcaattatgcgaacctgcggat
aaggcgccggtcggcgatgactggttgcacgaagtcaaatgggatggctatcgcctgttg
tgcacaattgttgatggcgttcccgccttgtggtcgcgcaatggtctggactggacagcg
cgcctgcctgatgtcgctcgtgatatggcattgctggggttgcagcaggcggcattcgat
ggagagctggtggtgctcaacggagtgcgcagcgacttttcggcattgcaggccacactg
tccggtgagcagcaggcgccattgagctatctgctatttgacctgattcatctggaaggg
cttgatctgtgcgatgtgcccttgcaggatcgcaaggcattgctgcagaccctgttacaa
gacgcgccatcacgactgcgatacagctcgcatctggtgggttcaggccccgatgtgttc
aaacaagtaactgcggaaaaactcgaaggcattatttcaaaacgaataaatgcaccgtac
cgcgccggtcgcagtcgaagctggcagaaaataaagatggaactcagtgatgagtttgcc
attgccggtttcattgaaccgaaaggcagccgtacgggtattggctcattgctgctggcg
gtaccgcagggcaggaccggctggcggcttgccgggcgcgttgggaccggcatgaatgat
gcaatgttgcgccagctatcggccatgctacgccctcaggccgtgaccgcgccgacggtc
acggtcgcggacatcgattcggatctgcgacgggcgaaatgggtcaggccgcgacaggtg
gttgaggtgttttatcgtggctatagcagccaggggctgttacgtcacacggccttcagg
gcattgcgggaagacaaatcagttgccgatctgcgtggcagtccggcacaagaggagcct
atgaaaaaagagattgttcacatcagcagtccggatcgcctggtgtaccccgagctcggc
gtgagcaagcaggatgtcgccgactattacgaacgcgtgatggactggcttttgccgggc
ttgatcgggcgtcctctggcggtgctgcgttgtcccgatggtacgcagaacgcctgcttt
ttccagaagcatcatacggccggcatggatgtcagtacggtcaatctgcaggaagagcag
gggggcagacagaattatctgatggtgcgcgacaagacggatgtcatgcaactggtccag
tttaatgccctggagtttcatccatggggtgcgcaggccgacagcccggatcattgcgat
cgcctggtgtttgatcttgatccttctgccgaagtgccctggaacaaggtgaagcaggcg
gcacgtcaggtgcgcgatttgctggcgcaattgcagttgcaatcgtttgtacgcactacc
ggtggtaaggggctgcacgtggtagcgcctctgaacccgccggcaccctgggacgacgca
agacagtttgcgcgggcatttgccgagtcgctggccggagcacatccggatacctatatc
gccactgcctctaaaaagcggcgcaaggggctgatattcgtcgattatctgcgcaacggg
cgtggcgcgaccagtgtctgttcgtattcgctacgtgcccggcctggcgccgcggtggcc
acaccactgcgctgggaagaactgggtcgcgtcaagtcgtcagatgccttcactatccgc
aatgtgctgcaacgtctggccaggcttgcggatgatccgtggcaggcgttgacacggatc
aggcagtcgctgccggatctggctgagtga
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