Alligator mississippiensis (American alligator): 102558017
Help
Entry
102558017 CDS
T03087
Symbol
USP40
Name
(RefSeq) ubiquitin specific peptidase 40
KO
K11869
ubiquitin carboxyl-terminal hydrolase 40 [EC:
3.4.19.12
]
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
amj01002
]
102558017 (USP40)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
amj04121
]
102558017 (USP40)
Enzymes [BR:
amj01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
102558017 (USP40)
Peptidases and inhibitors [BR:
amj01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
102558017 (USP40)
Ubiquitin system [BR:
amj04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
102558017 (USP40)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
UCH_1
YukD
Motif
Other DBs
NCBI-GeneID:
102558017
NCBI-ProteinID:
XP_006263295
UniProt:
A0A151N9M1
LinkDB
All DBs
Position
Un
AA seq
1246 aa
AA seq
DB search
MFGDLFEEEPSLAPGLPCGSGKKAKPRDAEPPAPREVTHLSGIKNQGGTCYLNSLLQTLL
FTPEFREALFSLGPEELGSLEDNNKPDAKVRIIPLQLQRLFAQLLLLDQQAASTTDLTDS
FGWNSNEEVRQHDVQELNRILFSALETSLVGTSGHDLINRLYHGTVVNQIVCKECKNISE
RQEDFLDLTVAVKDVSGLEEALCNMYVEEEYFENDNLYRCGACNKLVEASKSAKLRKLPP
FLTISLLRFNFDFEKCERYKETSCYTFPFRINLRPFCEQTELDDLEYMFDLFSVIIHKGG
CYGGHYHVFIKDVDELGNWQLQEDGNKLTKDKLVKDNESGKENENPLTDLKEILSQEESK
QIPVDQLGQKFLEKKGISWNKKYRKPFGPLRKYLQSHSQVFLFSPDGNKISLKENYHKLQ
FGSDSQGQDLQSPSQNNNVQWTSEKLSTRLKDDASGSHWFDLNDSKVQPIKEKDIEKQFQ
GKESAYMLFYRKSRLKRPSEAHANPRYGIPEHLLNEMNAANAELRKRRAECDSADNNIDL
HLHLASRYKFYNGALHPSLSRKESVLDLTIDKRKTLGDLRQSVFQLLEFWEGDLILSTAK
SLPAGLHLYQTLNGDELTLDGIGLADGADIFVWNGKEVGGIDVLTGLDHEPVLLNVLRLA
GYNKGGKGQHFTESQHIFPCSVELSTLCKALTSSRGIILMNSSGSDNEAKNWKVIPEENM
KKTVKTTGLTDGSSILVLDSHDQSLVNVVDGNLTAFTHDISWLQVKNFCRLEAEERLVKI
TATIETVMSDIKITAIRELQLEEQLVNDMCLKPINRNGKLLSPVPEDYTVKEAELKMGSL
LGLCHGKAPTSTQLFLYFVIGNDLQAVPEMEIVVEETATVKECLNLMLEKSGLPGDSWHL
RRIDWCYEAGEALSEENATLKELNVCNGDTLVITEGKLPPKGFLKVPIWWYEPLIYYGHQ
EPIQNQVNGVTCKIGALEVSSAGTSPTYIQTDMRLCYMGDIEISGEASLADLKIQAMTLP
SFQEFSVPSPEFLRAWTVESKRPGKLLRNNQQQLNEYKLGGKAEICIEPLQKEESLSPND
LLLRVQMGIPGERDYYCSADLLWDISKECTALALRQQLAAHYSLPVDKIEIAKHFPEKFE
WMPISSWTQQISKRKRKKKQESLQSAPYHLKDGDIIGVKNLLLDDSKDFSTMRDDIGKEK
LRLLAVEKKKSRQAEHLQNDVFSEGKVAPKHRKPEVALSINVGVFR
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgttcggggacctgttcgaggaggagccgtcccttgcgcctggcctcccttgtggctcc
gggaagaaggccaagccccgggacgcggagccgccggccccgagggaggtcacccattta
agcgggattaagaaccagggtgggacctgctacctcaactccctgctgcaaactctgctt
ttcacgccagagtttagagaggcactgttttctctaggccctgaagaacttggttctctg
gaagataacaataaaccagatgcaaaggttcggataattccattacagttgcaacggttg
tttgctcagcttttgctcttagatcagcaagctgcatctacaacagacctcactgacagc
tttggatggaacagcaatgaggaagtgagacaacatgatgtgcaggagttaaatcggatt
ctgttcagtgctttggaaacttctcttgtgggtacttctggccatgaccttattaatcgc
ctgtaccatggaactgttgttaaccagattgtttgtaaagaatgcaagaacattagcgag
agacaggaagatttcttagacctaacagtggctgtaaaggatgtatctggcttggaggag
gccctgtgtaacatgtatgtagaagaggaatattttgaaaatgataatttatatcgatgt
ggagcgtgcaataaactggttgaagcatcaaagtctgccaaactacgcaagttgcctcca
tttctcactatctccctcctgaggtttaactttgatttcgagaagtgtgaacgatacaag
gaaacgagctgctatacattccctttccggataaacctcaggcctttttgtgagcagacc
gagttggatgatttggagtacatgttcgacctcttttctgttattatacacaaaggtggc
tgctatggaggacattatcatgtttttatcaaggatgttgatgaattaggaaactggcaa
ttgcaagaggacggaaacaaactaactaaggataagcttgtgaaagataatgaaagtggc
aaagaaaatgagaatccactgacagacctgaaagagatcttatcacaggaagaatctaaa
caaattcctgtggatcagttagggcagaaatttttagagaaaaaagggatatcctggaac
aagaaataccggaaaccatttggaccattacgaaagtatttgcagagtcattctcaggta
tttctattcagtcctgatggaaataagattagtttaaaagagaactaccacaagctccag
tttgggtcagattctcaaggacaagatttgcagagcccttcccagaacaacaatgtccag
tggacttcagaaaaactgtccacaaggttaaaggatgacgcttctggttctcactggttt
gatttgaatgattcaaaagtccagccaattaaggagaaagatattgagaaacaatttcag
ggtaaagagagtgcctacatgctgttttatcgaaaatcccgattgaaaagaccatctgaa
gctcatgcaaatccaagatacggaattcctgaacacctcttgaatgaaatgaatgctgct
aacgctgaactgcggaagaggagggcagaatgtgactctgcagacaataacattgacttg
catcttcatttggcttctcgatataaattttacaatggggctctccacccatcgctttct
cggaaggaaagtgtgctggatctgactattgataaaagaaaaaccctaggagatctgcga
caatctgtatttcagctgttggaattttgggaaggagacctgattctcagtactgcaaag
tctctcccagcaggacttcatctttaccagacgcttaatggagatgagctgactctggat
ggcattgggttagctgatggggcagacatctttgtgtggaatggaaaggaggttggtggc
atcgacgtgctgacaggccttgaccacgagcccgtacttctaaatgttcttcgtttagcg
gggtataacaaaggaggaaaaggtcagcacttcactgaatcgcagcatatttttccatgc
agcgtagaactgagcactctgtgcaaagccttaacatcatcaagagggatcatcttaatg
aacagttcaggatcagacaatgaagctaaaaactggaaggtcattcctgaagagaatatg
aagaagacagtcaaaacaactggtttgacagatggaagctcaatcctagttttagacagc
catgaccaaagcttggtaaatgtggtagatggcaatttgactgcttttacacatgatatc
agctggctacaagttaaaaatttctgcaggttggaggctgaagagagactagttaaaatt
actgcaacgatagaaacagtgatgtcagacatcaaaattacagcaatacgggagttgcag
ttagaggagcaattagtgaatgatatgtgtctcaaacctattaacagaaatgggaagctt
ctgtctccagtgccagaggattacactgtcaaagaagcagagctgaagatgggaagcttg
ctgggactgtgccatggaaaagctccaacttccactcagctcttcttgtattttgttatt
ggaaatgatctacaggcagtcccagaaatggagatagttgttgaagagactgccactgtg
aaagagtgcctaaacttaatgctggagaaatctgggttaccaggtgacagctggcatttg
agaaggattgactggtgctatgaagctggagaggcattaagtgaggaaaatgccactttg
aaagagctcaatgtctgcaatggcgatacattggttatcactgaagggaaacttccacca
aagggtttcctgaaagtacccatctggtggtatgagcctttgatttactacggacatcaa
gagcctattcagaaccaagtgaatggtgtgacctgtaagataggggctttggaagtatct
tcagctggaacttctccaacatacatccaaacagacatgaggctttgttacatgggtgat
atagaaatctctggagaagcttctttggcagatctgaagattcaggccatgaccttgcca
tccttccaggagttcagtgtcccatcaccagagtttctcagagcctggacagtggaaagt
aagcgcccaggcaaacttttacgaaacaaccagcaacaactcaatgaatacaaactggga
ggcaaagcagaaatttgcatagaacctttacagaaagaagagagccttagccccaatgac
ttactgcttcgagtacagatgggcatacctggggagagggattattactgctctgcggat
ttgctgtgggatatctccaaggaatgcacagcgttggcactgaggcagcaacttgctgca
cattattctcttcccgtggataaaattgaaattgctaaacacttccctgagaagtttgag
tggatgccaatatctagctggacccagcaaatttcaaagagaaaaagaaagaaaaaacag
gagagtctgcagtcggcaccctatcacctgaaagatggagatattattggtgtgaagaat
cttttacttgatgacagtaaggacttcagtaccatgagagatgatattggaaaagagaag
ctgaggctacttgctgtagaaaaaaagaaaagcaggcaagcagagcatttgcagaatgat
gttttttctgagggaaaggtggctcctaaacatcgtaagccagaagtggctctttcaatc
aatgtaggagtcttcagatag
DBGET
integrated database retrieval system
