Alligator mississippiensis (American alligator): 102558230
Help
Entry
102558230 CDS
T03087
Symbol
CNOT6
Name
(RefSeq) CCR4-NOT transcription complex subunit 6
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102558230 (CNOT6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amj03019
]
102558230 (CNOT6)
Enzymes [BR:
amj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
102558230 (CNOT6)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102558230 (CNOT6)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102558230 (CNOT6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_1
LRR_6
Motif
Other DBs
NCBI-GeneID:
102558230
NCBI-ProteinID:
XP_006263591
LinkDB
All DBs
Position
Un
AA seq
557 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSSEEAANGKKSHWAELEISGKVRSLSSSLWSLTHLTALHLSD
NSLSRIPSDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELHLNNNLLRVLPFELGKLF
QLQTLGLKGNPLTQDILNLYQEPDGTRRLLNYLLDNLAGTAKRISTEQPPPRSWIMLQEP
DRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKAIMQEILSCNADIISLQE
VETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLGMEKQLVLVANA
HMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKPGVSGELGTIPLVLCADLNSLPDSG
VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGTTNGRITHGFKLKSAYENGLMPYT
NYTFDFKGIIDYIFYSKPQLNILGILGPLDHHWLIENNISGCPHPLIPSDHFSLFAQLEL
LLPFLPPVNGIHLPGRR
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaagtacgatccacctgatccacggaggatgtacacaattatgtcctca
gaagaagcagcgaatggaaagaaatcacattgggcggagttggaaataagtggaaaagta
agaagcttaagttcatcgttgtggtcgctgacccatttgacagctttgcatctcagtgac
aattccttatcccgtattccttcagacattgccaagcttcacaatctggtatacttggac
ctgtcctctaataaaatccgcagtttaccagcagagctcggaaacatggtgtcactcagg
gaactccatttaaataacaacctgttacgagttttacctttcgagctgggaaaactgttc
cagttacagacgttgggtctgaaaggaaatccacttacacaggatattctgaacctctat
caggaaccagatggaacacgaaggctactgaattatttgcttgataatttggcaggtact
gcaaaaagaatttcaacagaacagccacctccaagatcttggattatgttgcaagaacca
gaccgaacaagaccaacagccttgttttctgtcatgtgttacaacgtactttgtgataaa
tatgctacccggcagttatatggctattgtccatcatgggcactgaactgggaatacaga
aaaaaagccattatgcaggaaattttgagctgcaatgctgacatcataagtcttcaggag
gttgaaaccgaacagtactacagtttttttctagtagaactgaaagagcgtggctataat
gggttcttcagtccaaaatctagagccaggacaatgtcagaacaagaaagaaaacatgtt
gatggttgtgcaatatttttcaaaacagaaaaattcactttggttcaaaaacatactgtt
gagtttaatcaactagctatggcaaactcagaagggtctgaagctatgctgaaccgagtc
atgacaaaggataacattggagttgctgtactgctagagttgcgaaaggaattgatagaa
atgtcatctggaaagccacatcttgggatggagaagcagctagttcttgtagctaatgca
catatgcattgggatcctgagtattctgatgtgaagctggttcagactatgatgttcctc
tctgaggtaaagaacattattgataaagcctctcgtagtctcaaacctggtgtttcggga
gaacttggaaccattccacttgtactgtgtgcagatctcaattctctgccagattctggt
gttgttgagtacttgagcactggtggcgtggaaacaaatcataaagattttaaggaactg
cgatacaatgaaagtctgactaacttcagctgtaatgggaaaaatggaacaacgaatgga
aggatcacacatggtttcaagttgaagagtgcctatgagaatggcctaatgccttacaca
aattatacgtttgacttcaagggtattattgactacatcttctactctaaacctcagcta
aacatacttggcattcttggacctttggatcatcattggttaatagagaacaatataagt
ggttgtccacatccactcatcccttctgaccacttctcactttttgcacaactggagctt
ttgctgcctttcctgcccccggtaaatggaatccatctcccaggcaggagatga
DBGET
integrated database retrieval system
