Alligator mississippiensis (American alligator): 102560644
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Entry
102560644 CDS
T03087
Symbol
MBD4
Name
(RefSeq) methyl-CpG binding domain 4, DNA glycosylase
KO
K10801
methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
102560644 (MBD4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
amj03036
]
102560644 (MBD4)
03400 DNA repair and recombination proteins [BR:
amj03400
]
102560644 (MBD4)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Heterochromatin formation proteins
MBPs (metylated DNA binding proteins)
102560644 (MBD4)
DNA repair and recombination proteins [BR:
amj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
102560644 (MBD4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MBD
HhH-GPD
Motif
Other DBs
NCBI-GeneID:
102560644
NCBI-ProteinID:
XP_014460982
UniProt:
A0A151MKB0
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All DBs
Position
Un
AA seq
565 aa
AA seq
DB search
MAAPEVGEQGKGSDRSDMQTKDEGNQLVTETEEHFDSQTEGTETIAENSLLRKEDAAVVS
EVVVACHKVAPNGWEKITKQRQSGKTAGKYDVYFISPEGVKLRSKRALVEYFHKTGETGL
KLEDFDFTTPAQSNTKVRAKKCSAKAVKTAIQKKEHDNTKQEFSAQNGKGGGSVQVLQTI
DEEQENISVTFTQETEDLVVKERKPKDDSLEVKENGIIEKRVQIKKARKRSEKKNPACTQ
NKRQRKIPCNKQEVDINKSKTFQRKNNACASDSGDQNSNDVDTGKCGGDTGNALTSDSQS
EVNLGAVLAHSEEASGTTVELACSERSSDDTATKDSEENSAESEFGQGKDEMLLQSQDFK
SNAQTEISSSQPCDKKSLTSVKLLKEDYGPRTQVDRRRTSPYFSSKYNKEAPSPPRRKAL
RKWTPPRSPFNLVQEILFHDPWKLLIATIFLNKTSGKMAIPALWEFLEKYPSPEVTRTAD
WKEVSELLKPLGLYELRAKAIIKFSDEYLSKQWKYPIELHGIGKYGNDSYRIFCVNEWKE
VHPQDHKLNIYHAWLWENYEKLSLD
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atggcggccccggaagtaggggagcaaggaaagggcagtgaccgaagtgacatgcaaaca
aaagatgaaggaaaccagttagtgacagagacagaagaacattttgattcacaaaccgaa
ggtactgagaccatagccgagaacagtctcctgcgtaaagaagatgcagctgttgtctct
gaagtggttgttgcatgtcacaaagtcgctccaaatggatgggagaagatcacaaagcaa
agacaatcaggcaaaactgcaggaaaatatgatgtttattttatcagtcctgaaggagtg
aagttaagatcgaaacgtgcacttgtagagtattttcataaaactggagaaaccggtctt
aaactagaagattttgattttactactcctgctcaaagtaataccaaggtgagagccaaa
aaatgcagtgcaaaagctgtgaaaaccgcaatacagaaaaaggaacatgacaatacaaaa
caagagtttagtgcacaaaatggtaaaggcggtggtagtgttcaggtacttcagactatt
gatgaagagcaggaaaacatttctgtcacgttcacccaggaaacagaagacttggtcgtt
aaagaacgtaaaccaaaggatgattctttggaggttaaagaaaatgggataattgaaaaa
agagttcaaattaagaaagctagaaaaaggtcagaaaaaaagaatccagcttgtacccag
aacaaaagacagagaaaaataccgtgtaataaacaagaagttgacataaataaaagcaaa
acattccagagaaagaataatgcttgtgcttctgatagtggtgatcagaactcaaatgat
gtggatacaggaaagtgtgggggagacacaggaaacgcattgacatcggactcccaatca
gaggtgaatcttggagcagtcttagctcactcagaagaggcatcaggaaccacagtggag
ttagcctgctcagagaggagttctgatgatacagctacaaaagactctgaggagaactct
gcagaatcagaatttgggcaggggaaggatgaaatgcttttgcagagccaggacttcaaa
tctaatgctcaaacagaaatcagcagttcacagccttgtgacaagaaaagtttgacatca
gttaagttgctgaaagaagattatggcccaagaacacaggtggacagaaggagaaccagc
ccatatttttccagtaaatacaataaagaagctccaagcccacctaggcggaaggccttg
agaaaatggactcctcctcggtctccttttaatttggtccaggaaatactctttcatgat
ccctggaaactcctcattgcaaccatatttctcaacaaaacttcaggtaaaatggcaatc
cctgcactctgggagtttctggagaaatacccttctcctgaagtcacaagaacagctgat
tggaaggaagtgtcagagttgcttaaacctcttggcctctatgaactgagagcgaaggcc
attatcaagttttcagatgagtatctgagcaagcaatggaagtaccctattgaactgcat
ggaattggaaaatatggaaatgattcctacagaatcttttgtgttaatgagtggaaggag
gtacacccacaagatcacaaactaaatatatatcatgcctggctctgggaaaattatgaa
aaactgagtcttgattga
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