Alligator mississippiensis (American alligator): 102563470
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Entry
102563470 CDS
T03087
Symbol
ITGB5
Name
(RefSeq) integrin subunit beta 5
KO
K06588
integrin beta 5
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj04145
Phagosome
amj04148
Efferocytosis
amj04510
Focal adhesion
amj04512
ECM-receptor interaction
amj04810
Regulation of actin cytoskeleton
amj04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102563470 (ITGB5)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
102563470 (ITGB5)
04148 Efferocytosis
102563470 (ITGB5)
09144 Cellular community - eukaryotes
04510 Focal adhesion
102563470 (ITGB5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102563470 (ITGB5)
04810 Regulation of actin cytoskeleton
102563470 (ITGB5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
amj04131
]
102563470 (ITGB5)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
amj04515
]
102563470 (ITGB5)
Membrane trafficking [BR:
amj04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
102563470 (ITGB5)
Cell adhesion molecules [BR:
amj04515
]
Integrins
Integrin beta subunits
102563470 (ITGB5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
Integrin_b_cyt
PSI_integrin
I-EGF_1
EGF_2
Motif
Other DBs
NCBI-GeneID:
102563470
NCBI-ProteinID:
XP_006259730
LinkDB
All DBs
Position
Un
AA seq
819 aa
AA seq
DB search
MRGARGSAEHRPVPPGSMSPPRRPLRPPGAACLLLLWSLLRGAPGLNICTNGSATSCEDC
LLIHPKCAWCSKEDFGSTKSITSRCDYIENLIANGCAGAIESPQSSINIVKNNSLSSKGS
SLTHSDVTQMMPQKVSLNLRPGDQTSFRVQVRQVEDYPVDLYYLMDLSLSMKDDLDNIRN
LGTKLAEEMRQLTSNFRLGFGSFVDKNISPFSYTAPKYQNNPCTGYKIFPNCVPSFGFRH
ILSLTDKVDSFNEEVQKQKVSRNRDAPEGGFDAILQAIVCKEKIGWRKEASHLLVLTTDD
VPHIALDGKLGGLVQPHDGQCHLNEENEYSASNRLDYPSLALLGEKLAENNIHLIFAVTK
NHYVLYKNFTALIPGTTVEILRQDSKNIIQLIVKAYNSIRSKVELTVWDSPEDIGLTFTA
TCQDGLSYPGLRKCEDLQIGDTVSFDVSVKAQSCPAENTSHTFTIKPAGFRDTLEVLITY
NCLCGCSKQNEQNSSKCSGNGTYTCGLCECDPGYLGARCECEERESGTMYNMCREAEGKT
LCSGRGECSCNQCVCYESEFGKIYGPFCECDNFSCARYKGVLCSGHGKCDCGECKCHAGY
IGDNCNCTTETDRCVSNDSQICSGRGDCICGKCQCTEPGAFGEMCEKCPTCPGVCSTKRD
CIECMLFNSGRLADNQTCQKHCKDEIITRVDVLSTDDQSSVLCAYPVNDCVMKFTYLELP
SGKSNLTVLKEPECSSAPDALTILLGVVGSILLIGIVLLAIWKLLVTIHDRREFAKFQSE
RSRARYEMASNPLYREPISTHSLDFTFNKLNKSCNGTID
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggggcgcggggcagcgcggagcaccggccggtcccgcccggctccatgtccccc
ccgcggcggccgctgcgtccccccggcgccgcctgcctcctcctgctctggtcgctgctg
cgcggcgcgcccggtctcaatatttgcacgaatggaagtgctacctcttgtgaagattgt
ctgctcattcatcccaaatgtgcgtggtgctccaaagaggactttggcagcacaaaatcc
atcacctcaaggtgcgactacatagaaaacctgattgcgaatggctgtgcgggagcgatt
gagagtccccagagcagcattaacatagtgaagaacaattcgctcagcagtaagggctcc
agtttgacccactcggacgttactcagatgatgcctcagaaggtctccttgaacctacgc
cctggggaccagacctctttccgagtgcaggttcgacaggtggaggactatcctgtggat
ttatactacctgatggatctctccctgtccatgaaggatgacttggataacattcggaat
ctgggaaccaagctggcggaagagatgagacagctcaccagcaatttccggctgggtttt
ggctcttttgtggacaaaaacatttctcctttctcctacaccgctccaaaatatcaaaac
aatccctgcactggctacaagatatttccaaactgcgtcccgtcctttggcttccgccat
atcttgtctttgacggataaagtggacagtttcaatgaagaggttcagaaacagaaggtt
tcccgaaacagagatgctccagaaggcggttttgatgcaatcctgcaggcgattgtgtgc
aaggaaaagattggctggaggaaagaggcttctcacttgcttgtcctcacgacagatgat
gtgccacacatcgcgctggatgggaagctgggggggctggtgcagccccacgacggccaa
tgccacctgaacgaagagaacgaatacagcgcatccaatcggctggattatccttccctt
gcgcttcttggggaaaagctagcggaaaacaatatccacctcatttttgctgtgacaaaa
aatcattatgtgctttacaagaattttacagccctaattcctggaacaacagtagagatt
ctacgtcaagactccaaaaacataatccagctgattgtcaaggcatacaacagtattcgg
tctaaagtagaactaactgtttgggacagtcctgaagatattggcctgaccttcacagcc
acgtgccaagatggtttgtcatatcctggactcagaaagtgtgaggatctgcaaatagga
gatacagtttccttcgatgtgtctgtcaaagctcaaagctgcccagcggagaacacctcg
catacattcaccatcaaaccggctgggtttcgggacacgctggaggtgctgatcacctac
aactgcctttgtggatgtagcaaacagaacgaacagaacagcagcaagtgcagcgggaac
gggacctacacctgtggattatgcgaatgtgacccgggctatctaggagccaggtgtgaa
tgcgaagagagagagagtgggactatgtataacatgtgccgggaggctgaaggcaaaacc
ctgtgcagcggcagaggggaatgcagctgcaaccagtgtgtctgctatgaaagcgagttt
ggcaagatctacgggccgttctgtgaatgtgacaacttctcctgtgccagatacaagggc
gttctgtgttcaggtcatggaaagtgtgactgcggggagtgtaagtgccatgctggttac
atcggggacaactgtaactgcacgacagagacagacaggtgcgtctcaaatgacagtcag
atatgcagcggccgaggcgactgcatctgtgggaaatgtcaatgcaccgaacctggagcg
tttggagagatgtgtgagaagtgtcccacctgcccaggtgtctgcagcactaaaagggac
tgcatcgagtgcatgctgttcaactcaggaagactggctgataaccagacctgccaaaaa
cactgcaaggatgaaatcattacccgtgtggacgtcctcagcacagatgaccagagctcg
gtcttgtgtgcttacccagtgaacgactgcgtgatgaagttcacctacttggagcttccc
agtggaaagtcgaacctcacagtcctcaaagagccagaatgcagctctgccccagatgcc
ctgacaatcttgctgggagtagtaggcagcatcctgctgatcggcattgtcctcctggct
atctggaagctgctcgtcaccatccacgacagacgggagtttgcaaaattccaaagcgaa
cgctcccgggcgagatacgaaatggcatccaatcccctttatcgagagcctatttctacg
catagcttagatttcacgttcaacaagctcaacaagtcgtgcaacggtacaattgattga
DBGET
integrated database retrieval system
