Alligator mississippiensis (American alligator): 102563699
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Entry
102563699 CDS
T03087
Symbol
CACNA1S
Name
(RefSeq) calcium voltage-gated channel subunit alpha1 S
KO
K04857
voltage-dependent calcium channel L type alpha-1S
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj04010
MAPK signaling pathway
amj04020
Calcium signaling pathway
amj04260
Cardiac muscle contraction
amj04261
Adrenergic signaling in cardiomyocytes
amj04270
Vascular smooth muscle contraction
amj04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
102563699 (CACNA1S)
04020 Calcium signaling pathway
102563699 (CACNA1S)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
102563699 (CACNA1S)
09153 Circulatory system
04260 Cardiac muscle contraction
102563699 (CACNA1S)
04261 Adrenergic signaling in cardiomyocytes
102563699 (CACNA1S)
04270 Vascular smooth muscle contraction
102563699 (CACNA1S)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
amj04040
]
102563699 (CACNA1S)
Ion channels [BR:
amj04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
102563699 (CACNA1S)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
CAC1F_C
Pedibin
DUF2670
Motif
Other DBs
NCBI-GeneID:
102563699
NCBI-ProteinID:
XP_014464919
LinkDB
All DBs
Position
Un
AA seq
1862 aa
AA seq
DB search
MEPASVQEDQKKKQQKEKSKKPVPPAVPRPARALFCLTLQNPLRKACISIVEWKPFEIII
LLTIFANCVALAVYLPMAEDDTNATNSRLEKIEYVFLFIFTIEAMLKIIAYGFLFHADAY
LRNGWNVLDFAIISLGLFTMMLEQISVMQGAPPSGKGGFDVKALRAFRVLRPLRLVSGVP
SLQVVLNSIIKAMVPLLHIALLVLFMIIIYAIVGQELFKGKMHKTCYYTGTDIIATVGSE
KPAPCTSTGHGRHCTLNGTDCRGGWPGPNNGITHFDNFGFAMLTVYQCITMEGWTEVLYW
VNDAIGNEWPWIYFVSLILLGSFFILNLVLGVLSGEFTKEREKAKSRGTFQKLREKQQLE
EDLKGYIDWITHAEVVDSVRTRGEGMLPLDEGGSETESLYEIEGMNKWILFFRHWRRWNR
LFRRKCREVVKSKFFYWLVILLITLNTLSIASEHHMQPDWLTHVQDNANWVLLSLFAAEM
LLKMYALGLRQYFMSLFNRFDCFVVCAGIVETILVEFSIMSPLGISVLRCIRLLRIFKIT
KYWTSLSNLVASLLNSIRSIASLLLLLFLFIVIFSLLGMQLFGGKYDFEDMEVRRSTFDN
FPQALISVFQVLTGEDWNSIMYNGIMAYGGPSFPGMLVCIYFIILFVCGNYILLNVFLAI
AVDNLAEAESLTSAQKAKAEERKRRKMSRGYPGKSEEEKQLLAKKLEQKAKGEGIPTTAK
LKVDEFESNVNEIKDPYPSADFPGDDEEDEPEIPLSPRPRPLAELQLKEKAVPMPEASAF
FIFSPTNKIRILCHRIVNATWFTNFILLFILLSSISLAAEDPIRAESFRNQILGYFDIGF
TSVFTVEIVLKMTAYGAFLHKGSFCRNSFNILDLLVVAVSLISMGIQSSTISVVKILRVL
RVLRPLRAINRAKGLKHVVQCVFVAIKTIGNIVIVTTLLQFMFACIGVQLFKGKFNSCTD
PSKITEKECRGSFITYVDGDPTQIQLEQREWQHNDFHFDNVLSAMMSLFTVSTFEGWPQL
LYKAIDTHTEDMGPIYNYRVEMAIFFIIYIILIAFFMMNIFVGFVIVTFQEQGESEYKNC
ELDKNQRQCVQYALKARPLRRYIPKNPYQYQIWYVVTSSYFEYLMFFLILLNTICLGMQH
YNQSDEMNHASDILNVTFTILFTVEMFVKLMAFKAKGYFGDPWNVFDFLIVIGSIIDVIL
SEIDTVLASSGGLYCLSGGCNSIDSEDNSRVSITFFRLFRVLRLVKLLSRGEGVRTLLWT
FIKSFQALPYVALLIVMLFFIYAVIGMQMFGKVAMVDGTQINRNNNFQTFPQAVLLLFRC
ATGEAWQEILLAASYGKLCDPESDYAPGEEYTCGTGFAYFYFISFYMLCAFLIINLFVAV
IMDNFDYLTRDWSILGPHHLDEFKRIWAEYDPEAKGRIKHLDVVTLLRRIQPPLGFGKFC
PHRVACKRLVCMNMPLNSDGTVTFNATLFALVRTALKIKTEGNFEQANEELRAIIKKIWK
RTSMKLLDQVIPPIGDDEVTVGKFYATFLIQEHFRKFMKHQEEYYGYRPKKNPIEIQAGL
RTIEEEAAPEIHRAISGDLTAEEELERAMVEAAMEEGIYRRQGGLFGQVDNFIEHHSPLQ
PHVASQRPLQFTEQGSEDIDSPVFLDDFTPERNTNASNANNNNAASRVEYEDELQGKKMS
CQTRELSALAPKCTSHQEKLQQELSRRRAASVRVCPVSRLHIVPPQVPREEASTHEQGVE
EGEVQGSAWQVDGDSDLTREEDPAASAPATTLLIQEALISGGLSTLAHDPSFVTVTSNEM
AAAYQMEMEEVEMAAAEVLKGRKSLEGEKTTSPGQPLSSTSLHNSHGCSVVSSQEAISAT
HL
NT seq
5589 nt
NT seq
+upstream
nt +downstream
nt
atggagcctgcttctgtccaggaggatcagaagaaaaagcaacagaaggaaaaatcaaag
aaacctgtgccgcctgcagtcccacggccagccagggctctgttctgcttaacccttcaa
aacccacttcgaaaggcgtgcatcagtattgtggaatggaaaccctttgaaatcattatc
ctgctgaccatctttgccaactgtgtggcgctggcagtctacttgcccatggccgaggat
gataccaacgctacaaactcccgcctggagaagatagaatatgtcttcctgttcatcttt
accattgaagccatgcttaagatcattgcttatgggtttttgttccatgcggatgcctac
ctccggaatggctggaacgtgctggacttcgccatcatctccttggggctctttaccatg
atgctggagcagatcagcgtgatgcagggcgcacctccgagtgggaagggcggctttgac
gtcaaggccctgagagccttccgggtgctcagacctctgcgcctggtgtcaggagtgcca
agcctgcaggtggtcctgaactccatcatcaaggccatggtgcccctgttgcacatcgca
ctgctcgttctcttcatgatcatcatatatgccatcgttgggcaggagctgttcaagggc
aagatgcataagacctgctactacactgggactgatatcattgccacagtggggtcggag
aagccagccccatgtaccagtactgggcatgggcgtcattgcaccctcaatggcacggat
tgcagaggcgggtggccagggcccaacaatggcatcacccacttcgataactttgggttc
gccatgctgacagtgtaccagtgcatcaccatggagggatggactgaagtcctctactgg
gtgaatgacgccattggaaacgaatggccctggatctattttgtcagcctcatcctgctg
ggctccttcttcattctcaacctagtgctgggtgttctcagtggcgagtttaccaaggag
cgagaaaaggcgaaatcacggggcacgttccagaagctgcgggagaagcagcagctggag
gaggatcttaagggctacatagactggatcacacatgctgaagttgtggacagtgttcgg
accagaggagaaggaatgctgccattagatgaaggtggctcagagacagagagcctgtat
gaaattgagggcatgaacaagtggattctcttctttcggcactggaggcggtggaaccgc
ctgttccgcaggaagtgccgtgaagtggtgaagtccaagttcttctattggttggtgatc
ctcctcatcaccctcaacaccctgtcaatagcctctgagcaccacatgcagccagactgg
ctgacccacgtgcaagataatgccaactgggtgttgctgtcactatttgcggctgagatg
ttgctgaagatgtatgcgctgggcctgcgccaatacttcatgtccctcttcaaccgcttt
gactgcttcgtggtgtgtgctggcatcgtggaaaccatcctggtggagttcagcatcatg
tcacctctgggcatctctgttttgcggtgcatccgcctgctgaggatcttcaagataacc
aagtactggacttctctgagcaacctggtggcatccctgctgaactcgatccgctccatt
gcttccctcctcctcctcctcttcctcttcattgtcatcttctccctcctggggatgcag
ctctttggagggaagtatgactttgaggacatggaggttcgacgcagcactttcgacaac
ttcccccaggccctcatcagtgtcttccaggtcctgacaggagaagactggaattccatc
atgtacaatgggatcatggcctatggagggccctccttccctggcatgctggtctgcatt
tacttcatcatcctctttgtctgtgggaactatatcctgctcaatgtcttcctggcgatt
gcggtggacaatctggctgaggctgagagcctgacctctgcccagaaggccaaggcggag
gagaggaagcggaggaaaatgtccagaggttacccagggaaatctgaggaggagaagcaa
ctactggccaagaagctggagcagaaagccaaaggggaaggaatccccaccacagccaag
ctaaaagtagatgagtttgagtcaaacgtcaatgagatcaaagacccttacccctctgct
gacttcccaggcgacgatgaggaagatgaacctgaaatccccctgagccctcggccgcgc
cccctggcagagctgcagctcaaggagaaagctgtgcccatgcccgaagccagtgccttc
tttatcttcagccccaccaacaagatccgaattctgtgccacaggattgtcaacgccacc
tggttcaccaacttcatcctcctcttcattctgctcagcagcatctcactggcggccgag
gatcccattcgggctgagtccttccgaaaccagattcttggatattttgacattggattc
acctctgtgtttactgttgaaatagttttgaagatgaccgcatatggagcattcctccac
aagggatccttctgccggaactccttcaacatcctggatctgctggtggtggctgtctcc
ctcatctccatggggattcagtccagcaccatttctgtggtgaaaattttgagggtactg
agagtcctgcggccactgcgagccattaacagagcaaaggggctgaagcatgtggtccag
tgcgtgttcgtggccatcaaaaccattggcaacattgtgatagtcaccaccttgctgcag
ttcatgtttgcctgcattggggtgcagctcttcaaggggaagtttaacagctgtacagac
ccgtcgaagataaccgagaaagaatgcagagggtctttcatcacgtacgtggacggcgac
cccacgcagattcagctggagcagcgtgagtggcagcacaatgacttccactttgacaat
gtcctctcggccatgatgtccctcttcacagtctcgacatttgagggctggccacagctg
ctgtacaaggccatcgacactcacactgaggacatgggccccatctataactaccgggtg
gagatggccatcttcttcatcatctacatcatccttattgccttcttcatgatgaacatc
tttgtgggctttgttattgtcaccttccaggagcagggtgagagcgagtacaagaactgc
gagctggacaagaaccagcgccagtgtgtgcagtatgcgctgaaagcccggccactgaga
cgctacatccccaagaacccctatcaataccagatctggtacgtggtgacctcctcctac
ttcgagtacctcatgttctttctgatcctactgaataccatctgcctgggcatgcagcat
tacaaccagtctgatgagatgaaccatgcctcagacatcctgaacgtgaccttcaccatc
ctcttcactgtggagatgttcgtcaagctcatggcctttaaagccaagggctattttggc
gacccttggaacgtctttgatttcctcatcgttattggcagcatcattgatgtcatcctg
agtgagatagacactgttcttgcttccagtggcggactgtactgcctaagcggaggctgt
aatagcattgactctgaggacaactcccgtgtttccatcaccttcttccggcttttccga
gtgttgaggttggtgaagctgctgagccgaggggaaggagtcaggacccttctctggacc
tttatcaagtccttccaggccctgccctatgtggcgttgctgatcgtgatgctgtttttc
atctacgctgtgattgggatgcagatgtttgggaaagttgccatggtggatgggacccaa
atcaaccggaacaacaacttccagaccttcccccaagccgtgttgctgctcttcaggtgt
gcaacaggagaggcctggcaagagatcctgctggccgccagctacgggaagctgtgtgac
ccagagtccgactacgccccaggagaagagtacacttgtggcaccggctttgcctacttc
tatttcatcagcttctacatgctgtgtgccttcctgattatcaacctctttgtcgctgtc
atcatggacaactttgactacctcacgcgtgactggtccatcttgggtccacatcacctg
gatgaattcaaaagaatctgggctgaatatgacccagaagccaaggggagaatcaagcac
ctggatgtggtgaccctgctgaggcgcatccagccacccctcggctttgggaagttctgc
ccgcaccgggtggcttgcaagcgcctggtgtgcatgaacatgcctctgaacagcgatggc
accgttaccttcaatgccaccctctttgccctggtgaggacagccctcaagatcaagaca
gaaggtaactttgaacaggccaacgaggagctgagagccattatcaagaagatctggaag
cgaactagtatgaagctcctggaccaggtcattccacctattggagacgatgaggtgaca
gtaggcaagttttatgcaactttcctcatccaggagcacttcaggaagttcatgaagcac
caggaggagtattatggatacaggcccaaaaagaaccccattgaaatccaggctggcctg
aggaccattgaagaagaagctgcccctgagatccaccgagcaatctctggagatctgact
gctgaggaggagctggagagagctatggtggaggcagcgatggaggaagggatatacaga
aggcaagggggcttgtttggtcaggttgacaacttcattgagcaccatagccccctgcag
ccccatgtagccagccaaagacccctgcagttcactgagcagggcagcgaggacatagac
tcccctgtcttcctcgatgacttcaccccagagaggaataccaatgccagcaatgccaac
aacaacaatgcagcatcacgggtggagtatgaggatgagctgcaagggaagaagatgtcc
tgccagacacgagagctatctgcattggcgcccaaatgcacctcccaccaggagaagctg
cagcaggagctgagcaggagacgagcagccagcgtcagggtgtgtccagtgtcacggctg
cacattgtccccccacaggtgcccagagaggaggccagtacccatgaacagggagtggag
gaaggggaagtgcaaggctcagcatggcaagtggatggtgacagtgatctgaccagggag
gaagaccctgctgcctctgcaccagccaccaccttacttatccaggaggctctgatctcc
ggaggcctcagcaccctggcccacgacccatcctttgtgacggtgacaagcaatgagatg
gctgctgcttaccagatggagatggaggaggtggaaatggctgctgctgaggtcctgaag
ggaaggaaaagcctggagggtgagaagactacctctcctggccagcctctctcatccaca
tcactacacaactctcatgggtgcagcgtggtcagctcccaggaggccatttctgccacc
cacctgtga
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integrated database retrieval system