Alligator mississippiensis (American alligator): 106736863
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Entry
106736863 CDS
T03087
Symbol
TNC
Name
(RefSeq) tenascin C
KO
K06252
tenascin
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj04510
Focal adhesion
amj04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106736863 (TNC)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106736863 (TNC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
amj00536
]
106736863 (TNC)
Glycosaminoglycan binding proteins [BR:
amj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106736863 (TNC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_2
EGF_Tenascin
EGF
Pur_ac_phosph_N
hEGF
NDNF
fn3_2
Motif
Other DBs
NCBI-GeneID:
106736863
NCBI-ProteinID:
XP_006277031
LinkDB
All DBs
Position
Un
AA seq
2174 aa
AA seq
DB search
MGLPTQVLACAIIVLLHQHVSGGLIKRIIRQKREAGLNVTLPDDNQPVVFNHVYNIKLPV
GSLCSVDLDSASGDADLKAEIEPSKHYEEHTVNEDNQIVFTHRINIPRRACGCASAPDIK
DLLNRLEELEGLVSSLREQCTIGAGCCPSAQTAEGRVDTTPFCSGRGNYSTEICGCICDP
GWKGPNCSEPECLNNCYNRGRCVNGKCICDEGFTGKDCSELTCPGDCNDQGKCIDGVCVC
FEGYTGEDCVEELCLPPCSEHGKCVNGRCVCVEGFTGEDCSEPLCLNNCNNRGRCVENEC
VCDEGYTGEDCGELICPNDCFDRGRCINGTCYCEEGYTGEDCGELTCPNNCNGNGRCENG
QCLCDEGFVGDDCSERRCPKDCNKRGRCIDGQCVCNEGFEGIDCGQVKCPKDCNNRGQCV
NGQCVCNEGFMGEDCGVLRCPKDCSNHGRCVNGQCECDEGFMGEDCSELKCPNDCHNRGR
CVKGHCVCDEGFIGEDCGELRCPNDCYNRGRCVKGICVCDEGFVGNDCSELRCPNDCSKH
GRCVNGQCVCDEGYTGEDCSELRCPNDCHNRGRCVDGQCVCEKGFTGVDCGELACLDNCN
NRGRCENGQCVCDEGFTGIDCSQLRCANDCNNQGRCIEGQCVCDEGFTGEDCSQRICLNN
CNNLGRCVDGRCICDDGYIGDDCSDVSPPSDLTVTNVTDKTVNLEWKNENLVNQYLITYV
PTSIGGLDMQFTVPGNQTSATIHELEPGVEYFIRVFAILKNKKSIPISARVATYLPAPEG
LKFKSVKETSVQVEWDPLNISFDGWELIFRNMKKEDNGDITRSLTRPETSYMQPGLAPGQ
QYNVSLHIVKNNTRGPGLSKVITTKLDAPSQIEAKDVTDTTALITWFKPLAEIDGIELTY
GPKDVPGDRTTIDLSEDENQYSIGDLKPFTEYEVVLISRRGDMESDPASEVFHTDLDAPK
NLKRVSQTDNSITLEWKKSQADIDSYRVKFAPISGGDHAEITVPKSNQATTKATLTGLRP
GTEYGIGVTAVKEDTESAPATINAGTDLDSPKDLGVNDPTETSLSLRWRRPLAKFDRYRL
TYVTPSGRKNEVEIPADSTSYILQGLDAGTEYTISLIAEKGRHKSKPTTVKGSTAEEPEL
GNLTVSEVSWDGFQPTWTAADGAFETFVLQVQESDNPEEVQNHTVPGGLRFVNITALKDY
TRYNITLYGVIQGYRTKPLSAETMTAMRAEVGELNVSGITPEGFNLSWTATERAFEIFTI
EIINSNRFLEPMEYNISGNLRTAHISGLIPSTDYIVYLYGITPGFRTQAISVAVTTVDEP
LLSKLTVSNATSNSVSLTWEAQDTAFDHFVLEVRNSDLPLDSLVHTVSGASRSFVITNLR
AATNYTVQLHGLVDGQSGQTLTAVATTEAEPQLGTLTLTNVTPDSFNLSWTTRNGPFAKF
VINVRDSYSAHEPQELTVSGGARSAHISGLVDYTGYDINIKGTTSAGVHTEPLTAFVMTE
AMPPLENLTVSDINPYGFTVSWMASENAFDNFLVIVVDSGKLLDPQEFLLTGTQRHLKLK
GLITGIGYEVMLYGFAKGRQTKPLSIVAITEAEPEVDNLLVSDATPDGFRLSWTADDGVF
DSFFIKIRDTKKQSDPWERIVPGHERTQDITGLKEGTEYEIELYGIISGRRSQPINAIAT
TAMGSPKGINFTDITENSATVTWMLPRTRVESFRILYAPKTGGTPNIVTVDGSKTRTKLV
KLIPGVEYVVNITSVKGFEESEPVSGSLKTALDSPSGLMVVNITDSEALATWQPAIAAVD
NYVISYISEKEPEVKQMVSGNTVEYDLNGLRPATEYVLRLHAVEDGQQSATISTKFTTGM
DAPRDLSAIDIQSETAVLTWRPPRASPTGYLLIYESADGKVKEVILVPESTSYDLSELSP
STQYTVKLRALHRSLKSNVIQTVFTTSGLLYPFPKDCSQALLNGETASGLYTIYLNGEKS
QPLEVYCDMGSDGGGWIVFLRRHNGKEDFYRNWRTYSAGFGDPKDEFWIGLENLHKITSQ
GQYELRVDLRDKGETAFAIYDKFSVGDSKTRYRLKVDGYTGTAGDSMTYHNGRSFSTYDK
DNDSAITNCALSYKGAFWYKNCHRVNLMGRYGDNSHSQGINWFHWKGHEYSIEFAEMKLR
PSSFRNLEGRRKRA
NT seq
6525 nt
NT seq
+upstream
nt +downstream
nt
atggggctcccaactcaggttttggcctgtgcaatcatagttttgttacaccagcatgtc
agcggtggactcatcaagagaattattcggcaaaagcgggaggctggtttaaatgtgacc
ttgccagatgataatcagcctgtagtttttaatcatgtctacaacattaagttgcctgtg
ggatccctctgctctgtggacttggattcagctagtggagatgcagacctgaaggctgag
attgagccaagcaagcactatgaggagcacacagtgaatgaggacaaccagatcgtcttc
acgcatcgcatcaatattcctcggcgggcatgtggctgtgcatctgctcctgatattaag
gatctgctgaacagactggaggagctggaggggctggtatcttccttacgagagcagtgt
accattggtgcaggttgctgccccagtgcccaaacagcagaaggtcgagtggataccaca
cccttttgcagtggacgagggaactacagcactgagatctgtggctgcatttgtgacccc
ggctggaaaggacccaactgttcagaaccagaatgcctgaacaattgctacaacaggggc
cgctgtgttaatggcaagtgcatctgtgatgagggtttcacaggcaaggactgcagcgaa
ctcacctgccctggtgattgtaatgaccaaggcaagtgcattgatggtgtgtgtgtatgc
tttgagggttacaccggagaagactgtgttgaagagctttgcctaccaccctgcagtgag
catgggaagtgtgtgaatgggcggtgcgtgtgtgttgaaggcttcactggggaggactgc
agtgagcccctgtgcctgaacaactgcaacaaccgtgggcgctgcgttgaaaatgagtgt
gtctgtgatgagggctacacaggtgaagactgcggcgaactgatctgccccaatgactgc
tttgaccgtggccgctgcatcaatgggacttgctactgtgaagagggctacactggggag
gactgtggggagctgacctgtcccaacaattgcaacggcaatggccgctgtgagaatggt
cagtgcctctgcgatgaaggctttgtgggtgacgactgtagtgagcggaggtgccccaag
gactgtaacaagcgtggtcgttgtattgatgggcagtgtgtgtgcaatgagggctttgag
ggcatcgactgtggccaagtgaagtgccctaaagattgcaacaaccgtgggcagtgtgtc
aatggacagtgtgtatgcaatgagggcttcatgggtgaagactgtggtgtactaaggtgc
cccaaggactgctccaaccatggacgctgcgtcaatggacaatgcgagtgtgatgagggt
ttcatgggtgaagactgcagtgagctgaagtgtcccaatgactgtcacaaccgtggacgc
tgtgtcaagggacactgtgtgtgcgatgaggggttcataggcgaagactgtggtgagctg
aggtgccccaatgactgttacaaccggggacgctgtgtcaaaggcatctgtgtgtgtgat
gagggctttgtaggcaacgactgcagtgagctgaggtgccccaatgactgtagcaaacac
ggacggtgtgtcaacgggcagtgtgtgtgtgatgaaggatacacaggagaagactgttct
gaactgaggtgtcccaatgactgccacaaccgaggccgctgtgtggatgggcagtgtgtg
tgtgagaaagggttcactggagtggactgtggtgaacttgcttgcttggacaattgcaac
aaccgtggccgctgtgagaacggacagtgtgtgtgtgacgaaggtttcacagggattgac
tgcagccaactacggtgcgccaatgactgcaacaatcagggacgctgcattgaggggcag
tgtgtgtgtgatgagggcttcactggagaggactgcagccaacgaatctgcctcaacaac
tgcaacaacctgggccgctgtgttgatggacgttgcatctgtgatgatggatacattggc
gacgactgctctgatgtatcccctccaagtgacctgactgtaacaaatgtgacagataag
actgtcaatctggaatggaagaatgaaaatctagtcaatcaatacctcatcacctatgtt
cctaccagtatcggtggcctagatatgcagttcacagtgcctggaaaccagacatctgcc
acaatccatgaactggagccaggggtggagtactttatccgtgtctttgccatcttaaag
aacaagaagagtattccaatcagcgctagggtagcaacctatctgcctgctccagaaggc
ctgaaatttaaatcggttaaggagacatctgtacaggtagaatgggatcctctgaacatt
tcttttgatggatgggagcttatcttccgaaatatgaaaaaggaagataatggagacata
accagaagtttgacgaggcctgagacatcatatatgcagccaggcttagcaccgggacaa
cagtataatgtatctctgcatatagtgaaaaacaataccagaggacctgggctctccaag
gtgataaccacaaagcttgatgctcccagccagatagaggcaaaagatgttactgacacg
actgctttgatcacgtggttcaaacccttggctgaaattgatggcattgagcttacatat
ggccccaaggacgttcctggggacaggacaacaattgacctctctgaagatgaaaaccag
tactctattggagatctgaagccattcacagagtatgaagtggtgctgatctcccgccgt
ggagacatggaaagcgaccccgcgagtgaagtctttcacacagatctggatgctccaaag
aacctgaagcgcgtgtctcagacagacaacagcatcaccttggagtggaaaaagagtcaa
gcagatatcgatagctacagagtcaagtttgccccaatctcaggtggagaccatgctgag
atcactgtgccaaaaagcaatcaggccacaaccaaggctacactgacaggtttgagacct
ggaactgaatatggcattggagttacagcagtgaaggaggacacagaaagtgctcctgct
actattaatgctggaaccgacctggatagtcccaaggacctgggggtcaatgatcccact
gaaactagcctctctctgcgctggaggagaccactggccaagtttgatcgctaccgtctc
acttatgttaccccctctggaaggaagaatgaagtagagatcccagcagatagcacctcc
tacatcctgcaaggactcgatgctggtacagaatataccatcagcctgatagcagagaaa
ggcaggcataaaagcaaacccacaactgtcaaaggttctactgcggaggaacctgagctt
ggaaatttaacagtatcagaggttagctgggatggtttccaacccacgtggacagcagca
gacggggcctttgagacttttgtccttcaggtgcaggagtctgacaatccagaagaagtt
cagaatcatacagtcccagggggactgcgttttgtgaatattactgctctcaaggattac
acacgttacaatatcaccctgtatggtgtgattcagggctacaggaccaaacccctttct
gctgaaaccatgacagcaatgcgcgcagaagttggtgagctaaatgtttccggcattact
ccagaaggcttcaacctttcctggacagccactgaaagggccttcgagatctttaccatt
gaaattattaattctaacaggtttttggagcccatggagtacaacatctcaggcaattta
agaactgctcatatctcagggctaatccccagcactgattatattgtctacctctatggg
atcactcctggtttccgcacacaggcaataagtgttgctgttactacagtagatgaacct
ctccttagcaaactaactgtctcaaacgctacctcaaacagtgtgtctctcacgtgggaa
gcacaggatactgcctttgatcactttgttttagaagtcagaaactctgacttgcctttg
gactccctggtgcacacagtgtcaggggcttcaagaagttttgtaatcaccaatctaaga
gctgccactaattacactgtccaactccatggtctagttgatggacaaagtggtcagact
ttgacagcagtggcaactacagaggctgagccacagctgggcacgctaacactcacaaac
gttacccccgacagcttcaacctctcatggaccacaagaaatgggccttttgcaaagttt
gttataaatgttagagattcctattcagcacatgaacctcaggagcttacagtctcggga
ggtgcccgcagcgctcacatctcaggcctggtagattacactggctatgacattaatatt
aagggcaccaccagtgcaggtgtccacacagagcccctcactgcttttgtcatgacagag
gccatgcccccactggaaaatctaactgtctctgacattaacccttatgggttcacagtg
tcctggatggcatcggagaatgcctttgacaactttctagtaatcgtggtggattctggc
aagctgctggacccacaagagttcctccttacaggaacccagcggcatctgaagcttaaa
ggccttattactggcattggctatgaggttatgctttatggttttgccaaggggcgccaa
acaaagcccctaagcattgtggccattacagaagcagaacctgaggtcgacaaccttctg
gtttcagatgctaccccagatggcttccgtctttcctggactgcagatgatggggttttc
gacagcttttttattaaaatcagggataccaaaaagcagtctgatccatgggaacgtata
gtaccaggtcatgaacgcacccaagatataacagggctgaaagagggtactgagtatgaa
attgaactctatggaattatcagtggacgacgttcccaacccataaatgcaatagctacc
acagccatgggatctcccaaaggaatcaatttcaccgacatcactgaaaactcagctaca
gtcacctggatgctgccaagaacccgagtggaaagtttccggattctctatgcccccaaa
actggaggtactcctaatattgtgacagttgatggaagcaagactaggaccaagctggtg
aaactgatccctggtgtagaatatgttgtcaacatcacctctgtcaaaggatttgaagaa
agtgaacctgtctctggatctctgaaaacagctctggacagcccatctggcctaatggtg
gtgaatatcacagattctgaggccttagcaacctggcagccagcaattgctgctgtggac
aattatgtcatctcctatatttctgagaaggagccagaagtgaagcagatggtgtctggg
aacactgtggaatatgaccttaatggccttcgacctgcaactgagtatgtactgaggctc
catgctgtagaggatggtcagcagagtgcaactatatccaccaaatttactacagggatg
gatgctccaagagatctaagtgctattgatattcaatcagaaacggcagtattgacatgg
aggcctcctcgtgcttctcccactggctatctcctaatctacgagtctgctgatggcaaa
gtcaaggaagtcatcctggtacctgagtcaacttcctatgatttgtctgagctcagccca
tccactcagtacacagtgaaactgagggcactgcatagatccctgaagagcaatgtcatc
cagactgttttcacaacaagtggacttctctatcctttccctaaagactgctctcaagct
ctattgaatggagaaactgcctctggactctacaccatttatctgaatggagagaagtct
cagccactggaggtgtactgtgacatgggctctgatggaggcggatggattgtgttcctg
aggcgccataatggaaaagaggatttctacaggaattggaggacatacagtgctggcttt
ggtgatcccaaggacgagttctggatcggcctggagaatctccacaaaatcacctctcag
ggccagtatgaactgcgtgtggatctgcgagacaagggcgagacagcttttgctatctat
gacaagtttagcgttggagactccaagacccgatatcggctaaaagtggatggatacact
ggcacggcaggtgactccatgacatatcacaatggacggtccttctctacctacgacaag
gacaatgactctgccatcactaattgtgctttgtcatacaagggtgctttctggtacaag
aactgccaccgggtcaatctgatgggcagatatggtgacaatagtcacagtcagggtatt
aactggttccattggaagggccatgaatattccattgagtttgcagaaatgaagttgaga
ccctccagcttccggaacctagaaggaagacgaaagcgagcataa
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integrated database retrieval system
