Alligator mississippiensis (American alligator): 106737180
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Entry
106737180 CDS
T03087
Symbol
HDAC1
Name
(RefSeq) histone deacetylase 1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03082
ATP-dependent chromatin remodeling
amj03083
Polycomb repressive complex
amj04110
Cell cycle
amj04330
Notch signaling pathway
amj04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
106737180 (HDAC1)
03083 Polycomb repressive complex
106737180 (HDAC1)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
106737180 (HDAC1)
04350 TGF-beta signaling pathway
106737180 (HDAC1)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
106737180 (HDAC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
amj03036
]
106737180 (HDAC1)
Enzymes [BR:
amj01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
106737180 (HDAC1)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
106737180 (HDAC1)
HDAC complexes
Sin3A-HDAC complex
106737180 (HDAC1)
BRAF-HDAC complex
106737180 (HDAC1)
REST complex
106737180 (HDAC1)
SHIP complex
106737180 (HDAC1)
MiDAC complex
106737180 (HDAC1)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
106737180 (HDAC1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
106737180 (HDAC1)
Chromatin remodeling factors
NuRD complex
106737180 (HDAC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
106737180
NCBI-ProteinID:
XP_019354401
LinkDB
All DBs
Position
Un
AA seq
480 aa
AA seq
DB search
MALTQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVAS
AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPVISKVMETFQPSAVALQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGG
GGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQPIPEDAVQEDSGDEDEEDPDKRISIRNSDKRIACDEEF
SDSEDEGEGGRKNVANYKKAKRAKTEEDKEEEEKKDEKEEEKTKEEKAEPKGVKEETKSA
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgacgcaggggaccaagcggaaagtctgttattactatgatggggacgttgga
aactactattatggccagggccatccaatgaagccccacaggatccgaatgacccataac
ctcctgctgaactatggcctttacagaaaaatggagatctatcgtccccacaaagcgaat
gctgaagaaatgaccaagtaccatagtgatgactacattaaatttctgagatctatacgc
ccagataatatgtctgagtacagcaagcagatgcaaagattcaacgttggggaagattgc
cccgtgtttgatggattgtttgagttttgtcagctgtctgcaggaggatctgtcgccagt
gctgtgaagctgaacaaacagcaaacagatattgctgtgaattgggcaggaggccttcac
catgctaagaagtcagaggcttctggtttctgttatgtcaatgatatagtcttagccatc
ttggaactgctaaagtaccaccagagagtgctgtatattgacattgatattcaccatgga
gatggtgtggaggaggccttttataccacagaccgtgtcatgacagtatccttccataaa
tatggagaatacttcccaggaacaggggacctgcgggatattggtgcaggcaaaggcaaa
tattatgctgtcaactatcccctccgggacgggattgacgatgagtcctatgaggcaata
tttaagccggtgatatctaaagtgatggagacgttccagcccagcgcagttgccctgcag
tgtggatcagattctctgtcaggggacaggttgggctgttttaatctgaccatcaaaggt
catgccaagtgtgtggagttcgtaaagagttttaatttgcccatgctgatgttaggagga
ggtggctacacgatccgcaatgtggctagatgctggacctacgagacggctgtagctttg
gacactgaaattccaaatgagcttccgtataatgactatttcgaatactttggaccagac
tttaaactccacatcagtccttcaaatatgaccaatcagaacaccaatgagtatcttgag
aagattaagcagcgtctctttgagaatttacgtatgcttcctcatgcccctggcgtccag
atgcagccaattcctgaggatgctgttcaggaagatagtggagatgaagatgaagaagat
cctgacaaacgcatttcaatccgcaattctgataagagaatagcctgtgatgaagaattc
tcagattctgaagatgaaggagaaggtggtcgcaaaaatgttgccaactataagaaagcc
aagcgtgcaaaaacagaagaggataaagaggaggaggagaaaaaagatgagaaagaagag
gagaaaacaaaagaggagaaagcagaacctaaaggggtaaaggaagagactaaatcagcc
taa
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