Ailuropoda melanoleuca (giant panda): 100476237 Help Entry 100476237         CDS       T01329                                  Symbol COL1A1 Name (RefSeq) collagen alpha-1(I) chain   KO K06236   collagen type I alpha Organism aml  Ailuropoda melanoleuca (giant panda) Pathway aml04151   PI3K-Akt signaling pathway aml04510   Focal adhesion aml04512   ECM-receptor interaction aml04611   Platelet activation aml04820   Cytoskeleton in muscle cells aml04926   Relaxin signaling pathway aml04933   AGE-RAGE signaling pathway in diabetic complications aml04974   Protein digestion and absorption aml05146   Amoebiasis aml05165   Human papillomavirus infection aml05205   Proteoglycans in cancer aml05415   Diabetic cardiomyopathy Brite KEGG Orthology (KO) [BR:aml00001]  09130 Environmental Information Processing   09132 Signal transduction    04151 PI3K-Akt signaling pathway     100476237 (COL1A1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     100476237 (COL1A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     100476237 (COL1A1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     100476237 (COL1A1)  09150 Organismal Systems   09151 Immune system    04611 Platelet activation     100476237 (COL1A1)   09152 Endocrine system    04926 Relaxin signaling pathway     100476237 (COL1A1)   09154 Digestive system    04974 Protein digestion and absorption     100476237 (COL1A1)  09160 Human Diseases   09161 Cancer: overview    05205 Proteoglycans in cancer     100476237 (COL1A1)   09172 Infectious disease: viral    05165 Human papillomavirus infection     100476237 (COL1A1)   09174 Infectious disease: parasitic    05146 Amoebiasis     100476237 (COL1A1)   09166 Cardiovascular disease    05415 Diabetic cardiomyopathy     100476237 (COL1A1)   09167 Endocrine and metabolic disease    04933 AGE-RAGE signaling pathway in diabetic complications     100476237 (COL1A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:aml00536]     100476237 (COL1A1) Glycosaminoglycan binding proteins [BR:aml00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    100476237 (COL1A1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC Motif Other DBs NCBI-GeneID:  100476237 NCBI-ProteinID:  XP_034496495 Ensembl:  ENSAMEG00000011903 LinkDB All DBs Position 13:20918583..20935005 Genome browser AA seq 1460 aa AA seqDB search MFSFVDLRLLLLVAATALLTHGQEEGQEEDIPPVTCVQNGLRYYDRDVWKPEACRICVCD NGNVLCDDVICDETKNCPGAQVPPGECCPVCPDGEASPTDQETTGVEGPKGDTGPRGPRG PAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQMSYGYDEKSTGGISVPGPMGPS GPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGER GPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPR GLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGARGSE GPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPS GPPGPKGNSGEPGAPGNKGDTGAKGEPGPTGIQGPPGPAGEEGKRGARGEPGPTGLPGPP GERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSP GSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPP GAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVP GDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAP GLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGEA GPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPA GPTGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKE GGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLP GQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGSPGAEGSP GRDGSPGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPIGPVGAR GPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPP GSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSGGFDFSFLPQP PQEKAHDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKM CHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPHVAQKNWYISKNPKEKRHV WYGESMTDGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNL KKALLLQGSNEIEIRAEGNSRFTYSVTYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAP LDVGAPDQEFGMDVGPVCFL NT seq 4383 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggacctccggctcctgctcctcgtagcggccaccgccctcctgacg cacggccaagaggagggccaagaagaagacatcccaccagtcacctgcgtacagaacggc ctcaggtactatgaccgagacgtatggaaacccgaggcctgccggatctgtgtctgcgac aacggcaacgtgttgtgcgatgacgtgatctgcgacgaaaccaagaactgtcccggcgcc caagtccccccgggcgaatgctgccccgtctgccccgacggcgaggcgtcacctaccgac caagaaaccacaggagtcgagggacccaagggagacactggcccccgaggtccaagggga cctgccggcccccctggccgagatggcatccccggccagcctggacttcccggccccccc ggacctcccggcccccccggacctcctggcctcggaggaaactttgctccccaaatgtct tacggctatgatgagaaatcaactggaggaatctccgtgcctggccccatgggtccttct ggtcctcgtggtctccctggcccccctggcgcacctggtccccaaggtttccaaggcccc cctggtgagcctggcgagcctggagcctcaggtcccatgggtccccgtggtccccctggc ccccctggcaagaacggagatgatggtgaagctggaaagcctggtcgtcctggtgagcgt gggcctcctggacctcagggtgctcggggattgcctggaacagctggtcttcctggaatg aagggacacagaggtttcagtggtttggatggtgccaagggagatgctggtcctgctggt cccaagggtgagcccggtagccctggtgaaaatggagctcctggtcagatgggaccccgt ggtctgcctggtgagagaggtcgccctggagcccctggccctgctggtgctcgtggaaac gatggtgctactggtgctgctgggccccctggtcccactggccctgctggtcctcctggc ttccctggtgctgttggtgctaagggtgaagctggtccccaaggagcccgtggctctgaa ggtccccagggtgtgcgtggtgagcccggcccccctggccctgctggtgctgctggccct gctggaaaccctggtgctgatggacagcctggtgctaaaggtgctaatggcgctcctggc attgctggtgctcccggcttccccggtgcccgaggcccttctggaccccagggccccagc ggtcctcctggtcccaagggtaacagcggtgaacccggtgctcccggcaacaaaggagac actggagccaagggagagcccggccccactggtattcaaggcccccctggccctgctggg gaagaaggaaagcgaggagcccgaggtgaacccggacccactggcctgcctggacccccc ggcgagcgtggcggacctggtagccgtggtttccctggtgcagatggtgtcgctggtccc aagggtcccgctggtgaacgtggctctcccggccccgctggccccaaaggttcccctggt gaagcgggtcgtcccggtgaagctggtctgcctggtgccaagggtctgactggaagtcct ggcagtcccggtccagatggcaaaactggcccccctggtcccgctggtcaagatggtcgc cctggccccccaggcccccccggtgcccgtggtcaggccggcgtgatgggtttccctggg cctaaaggtgctgctggagagcctggcaaggctggagagagaggtgtgcctggcccccct ggtgctgttggtcccgctggcaaagacggagaagctggggctcagggaccccctggccct gctggccccgctggcgagagaggcgaacaaggcccagctggctcccccggattccagggt ctccctggccccgctggtcctcccggtgaagcaggcaaacccggtgaacagggtgttcct ggcgaccttggtgcccccggcccctctggagcaagaggcgagagaggtttccctggtgaa cgtggtgtgcaaggtccccccggccccgcaggtccccgcggagccaacggtgcccctggc aatgacggtgctaagggtgatgctggtgcccccggagccccaggtagccagggcgctcct ggccttcagggaatgcctggtgaacgaggcgcagctgggcttcccggccctaagggtgac agaggcgatgctggtcccaaaggtgctgacggttctcctggcaaagatggtgtccgtggt ctgactggacccattggtcctcctggccccgccggtgcccctggtgacaagggtgaagct ggtcctagcggccctgctggtcccactggagctcgtggcgcccccggagaccgtggtgag cctggtccccccggccctgctggcttcgctggcccccctggtgctgatggtcaacccggt gctaaaggcgaacctggtgatgctggtgctaaaggcgacgctggtccccctggccccgct ggacccactggaccccctggccccattggtaacgttggtgctcctggacccaaaggtgct cgtggcagtgctggtccccctggtgctactggtttccctggtgctgctggccgagtcggt ccccccggcccctctggaaatgctggaccccctggaccccctggccctgctggcaaagaa ggtggcaaaggcccccgtggtgagaccggccccgctggacgtcctggtgaagtcggtccc cccggtccccctggccccgctggcgagaaaggatctcctggtgctgacggacctgctggt gctcccggcactcccggacctcaaggcattgctggacagcgtggtgtggtcggcctgccc ggtcagcgaggagagagaggcttccccggtcttcctggcccctctggtgaacctggcaag caaggtccttccggagcaagtggggagcgtggcccccctggtcccatgggcccccctgga ttggctggaccccctggcgagtctggacgtgagggatctcctggtgctgaaggctcccct ggacgagatggttctcccggccccaagggtgaccgtggtgagaccggccctgctggacct cctggtgcccctggtgctcctggtgcccctggccccgtcggccccgctggcaagagcggc gaccgcggtgagactggtcctgctggtcctgctggcccgatcggccctgttggtgctcgt ggtcctgctggaccccaaggcccccgtggtgacaagggtgagacaggcgaacagggtgac agaggcataaagggtcaccgtggcttctctggtctccagggtccccctggtcctcccggc tctcctggtgaacaaggtccttctggagcttctggtcctgctggtccccgaggtcccccc ggctctgccggttctcctggcaaagacggactcaacggtctcccaggccccattggcccc cctggtcctcgtggtcgtactggtgatgctggccctgttggtccccctggccctcctgga ccccctggtccccccggtcctcccagcggcggtttcgacttcagcttcctgccccagcca cctcaagagaaggctcacgacggcggccgctactaccgggccgatgatgccaatgtggtc cgtgaccgtgacctcgaggtggacaccaccctcaagagcctgagccagcagatcgagaac atccggagccctgaaggaagccgcaagaaccctgcccgcacctgccgcgacctcaagatg tgccactccgactggaagagcggagaatactggattgaccccaaccaaggatgcaacctg gatgccatcaaggtcttctgcaacatggagacaggtgagacctgcgtgtaccccactcag ccccatgtggcccagaagaactggtacatcagcaagaaccccaaggaaaagaggcacgtc tggtacggcgagagcatgaccgacggattccagttcgagtatggtggccagggctccgat cctgctgatgtggccattcagctgacgttcctgcgcctgatgtccaccgaggcttcccag aacatcacctatcactgcaagaacagcgtggcctacatggaccagcagaccggcaacctc aagaaggccctgctcctccagggctccaacgagatcgagatccgggccgagggcaacagc cgcttcacctacagtgtcacctacgacggttgcacgagtcacaccggagcctggggcaag acagtgatcgaatacaaaaccaccaagacctcccgtttgcccatcatcgatgtggcacca ttggacgtcggcgccccagaccaggaattcggcatggatgttggccctgtctgcttcctg taa

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