Ailuropoda melanoleuca (giant panda): 100476294
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Entry
100476294 CDS
T01329
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
100476294 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aml03400
]
100476294 (LIG4)
Enzymes [BR:
aml01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100476294 (LIG4)
DNA repair and recombination proteins [BR:
aml03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
100476294 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
ATG17_like
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
100476294
NCBI-ProteinID:
XP_002915906
Ensembl:
ENSAMEG00000028547
UniProt:
D2H2R3
LinkDB
All DBs
Position
7:complement(136877541..136944231)
Genome browser
AA seq
911 aa
AA seq
DB search
MAASHTSPTVASRVPFADLCSTLERIQRSRERAAKIRHFREFLDSWRRFHDALHKNQRDV
SDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPRGGKDALKLLNYRTPTGTRA
DAGDFATIAYFVLKPRCLQKGSLTIQQVNDILDSIASNNSARRKDLIKKSLLQLISQSSA
LEQKWLIRMIVKDLKLGFSEQSVFSVFHNDAAELHNVTTDLEKVCRQLHDPSIGLSDISI
TLFSAFKPMLAAIADIERIEKDMKHQSFYIETKLDGERMQMHRQGDVYQYFSRNGYNYTD
QFGDSPREGSLTPFIHSAFKTDVQICILDGEMMAFNPNTQTFMQKGNKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGRETLKKRHEILTSVFTPIPGRIEIVQKTQAHTQKEVIDALNE
AIDKREEGIMIKHPLSIYKPDKRGEGWLKIKPEYVDGLMDELDILIVGGYWGKGSRGGMM
SHFLCAVAEKPPPGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWKPFHKKAPPSSILC
GTEKPEVYIEPCHSVIVQVKATEIVSSDMYKAGCTLRFPRIERIREDKEWHECTTVDDLE
QLRGKASGKLASKHLYVGDDDEPQEKKRKAAPKVKKVIGIIEHLKAPNLSNVNKVCNIFE
DVEFCVMSGTGSHPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSENIRVKNIISSNKHDV
VKPEWLLECFKTKSCVPWQPRFMIHMCPSTKEHFAREYDHYGDSYFIDTDLNQLKEVFSG
IKNSGEQTPGEMASVIAHLEFRYSWDRCPLSMFRQHIIYVDVYAVINDLSTKIEGTRLAV
MGLELRFHGAKVVSRLAQGVSHVIVGEDRSRVADLKAFRRTLKRKFKILQQDWVTDSIDK
CELQEENRYLV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctcacacacttcgccgactgtcgcatctcgcgttccttttgcagacttgtgt
tcgactttagaacgcatacagagaagtagagagcgtgcagcaaaaatcagacacttcagg
gagtttttagattcttggagacgatttcatgatgcccttcataagaaccaaagagatgtc
agcgactccttttatccagcgatgagactcattctccctcagctagagagagagagaatg
gcctacggaatcaaagaaactatgcttgctaaactttatattgagttgcttaatttacct
agaggaggaaaagacgcccttaaacttttaaattacagaacacccactggaactcgtgcg
gatgccggagactttgcaacaattgcgtattttgtgttgaaaccaagatgtttgcagaag
ggaagtttaaccatacaacaggtaaatgacattttagactcaattgccagcaataattct
gccagaagaaaggacctgataaagaagagtcttcttcagctaataagtcagagttcagcc
ctggaacaaaagtggcttatacggatgattgtaaaggacttaaaacttggtttcagcgaa
cagtctgtattttctgttttccataatgatgctgctgagttgcataatgtcaccactgat
ctggaaaaagtctgtaggcaactgcatgatccttccataggcctcagtgatatttctatc
actttattctctgcctttaaaccaatgctggctgcaatagcagatattgagcgaatcgag
aaagacatgaaacaccagagtttctacattgaaaccaagctagatggcgagcgtatgcaa
atgcacagacagggggatgtgtatcagtacttctcccggaatggatataactatacggat
cagtttggcgactctccccgggaaggttctcttacaccgttcattcacagtgcattcaaa
acagacgtacaaatctgtatcctggatggcgagatgatggccttcaaccctaacacacag
acttttatgcaaaaggggaataagtttgatatcaaaagaatggtggaggattctgatctg
cagacttgttattgtgtgtttgatgtactgatggttaataataaaaagctaggacgtgag
accctgaaaaagaggcatgaaattcttactagtgtttttacaccaataccaggtagaata
gaaatagtgcaaaaaacacaagctcatactcagaaagaagtgattgatgctttgaatgaa
gcaatagataaaagggaagagggaatcatgataaaacaccctctgtctatttacaagcca
gacaaaagaggtgaaggatggctgaagattaaaccagagtacgtggatgggctgatggac
gagctggacatcttaattgtcgggggctactggggtaaaggttcccgaggggggatgatg
tctcattttttatgtgctgtagcagaaaagcctcctcctggtgaaaaaccatccgtgttt
cacactctgtgccgtgttggttcaggttataccatgaaggaactgtacgatctgggtttg
aaattggccaaacattggaagccttttcataaaaaagctccacccagcagcattttatgt
ggcacagagaagccagaagtatacatcgagccttgccattctgtcattgttcaagtgaag
gcgacagagatcgtctccagtgatatgtataaagctggctgcacgttgcgttttccacgg
attgaaaggataagagaagacaaagagtggcacgaatgcaccaccgtggatgacttagag
caacttcgcgggaaagcgtcgggaaagcttgcgtccaaacacctgtacgtaggtgacgat
gatgagccgcaagaaaagaagcggaaagctgccccgaaggtgaagaaagttattgggatt
atcgagcacttaaaagcacccaacctttctaacgtaaacaaagtttgtaatatattcgaa
gatgtggagttctgtgtcatgagcggaacgggcagccatccaaagcctgatctggagaac
aggatcgcagaatttggaggttatatcgtccaaaatccaggcccagacacatactgcgtg
atcgcagggtctgagaacatcagagtgaaaaacataatttcttcgaataaacatgatgtt
gtcaagcccgagtggctgctagagtgttttaagaccaaaagctgtgtgccgtggcagcct
cgctttatgattcatatgtgcccatcgacaaaggaacattttgcccgtgaatacgatcat
tatggcgacagttattttattgatacagatttgaaccaactgaaggaagtgttctcaggc
attaaaaattccggcgaacagactcctggagaaatggcttctgtgattgcccatttagag
tttcggtattcctgggaccgctgccctctcagtatgttccgacagcacattatttatgtg
gacgtgtatgctgtcattaatgacttgagcaccaaaatcgaggggacgagattagctgtc
atgggtttggaacttcgatttcatggagccaaggtagtttcccgtttagctcagggagtg
tctcacgtaatcgtcggggaggaccggagtcgtgttgcagatttaaaagcttttcgaaga
actcttaagagaaagtttaaaatcctgcaacaagattgggtcactgattccatagacaag
tgtgagttgcaggaggaaaatcgatatttggtttaa
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