Amycolatopsis methanolica: AMETH_3879
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Entry
AMETH_3879 CDS
T03230
Symbol
gabD
Name
(GenBank) putative 6-oxohexanoate dehydrogenase
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
amq
Amycolatopsis methanolica
Pathway
amq00250
Alanine, aspartate and glutamate metabolism
amq00310
Lysine degradation
amq00350
Tyrosine metabolism
amq00650
Butanoate metabolism
amq00760
Nicotinate and nicotinamide metabolism
amq01100
Metabolic pathways
amq01120
Microbial metabolism in diverse environments
Module
amq_M00027
GABA (gamma-Aminobutyrate) shunt
Brite
KEGG Orthology (KO) [BR:
amq00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
AMETH_3879 (gabD)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
AMETH_3879 (gabD)
00310 Lysine degradation
AMETH_3879 (gabD)
00350 Tyrosine metabolism
AMETH_3879 (gabD)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
AMETH_3879 (gabD)
Enzymes [BR:
amq01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
AMETH_3879 (gabD)
1.2.1.20 glutarate-semialdehyde dehydrogenase
AMETH_3879 (gabD)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
AMETH_3879 (gabD)
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Motif
Pfam:
Aldedh
OmdA
DUF1771
Hexokinase_2
Motif
Other DBs
NCBI-ProteinID:
AIJ23971
UniProt:
A0A076MY87
LinkDB
All DBs
Position
complement(3998162..3999544)
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AA seq
460 aa
AA seq
DB search
MSGYRTINPATGELVKEFPAASDQEVEHALARAHAAYRSWREVPTGQRAALLRRIAQLHR
ERADELAAILTLEVGKPITQAKGEVALVASIYEYYAEHGARFLADRQLDVAGGGEAVVRT
EPIGVLVGIMPWNFPYYQVARFAAPNLVLGNTILLKHARNCPQAALAVEALIAEAGAPDG
AYVNLFADSGQIAHLIGDPRVQGVSLTGSERAGSAVAEITGRHLKKYVLELGGSDPFIVL
DGENLDSTVDDAVGGRLFNGGQACTASKRFIVLADVYAAFLDKFVARMRQWRPGEPADPA
TRLGPLSSHQVVDDLEEQVADALAKGATLHTGGRRGDGPGAWYEPTVLTDVTPGMRAYSE
ELFGPVAVVHQAGSVEEAVALANESPYGLAASIYTADVQRARALARDLECGMVWINGTSK
SAPDLPFGGVKRSGVGRELSELGISEFANKKLVRIPRVRS
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgagcggttaccgcaccatcaatccggcgaccggcgagctcgtcaaagagttcccggcg
gcctccgaccaggaggtggagcacgccctggcccgggcgcacgccgcctaccggtcgtgg
cgcgaggtgccaaccgggcagcgcgcggccctgctgcgccgcatcgcgcagctgcaccgg
gagcgggcggacgaactcgccgcgatcctgaccctggaggtgggaaagccgatcacccag
gcgaagggcgaggtcgcgctggtcgcgtccatctacgagtactacgccgagcacggcgcg
cggttcctggcggatcggcagctggacgtcgcgggcggcggcgaagcggtcgtgcgcacc
gagccgatcggtgtgctggtggggatcatgccgtggaacttcccctactaccaggtggcg
cggttcgccgcgccgaacctggtgctcggcaacacgatcctgctcaagcacgcgcggaac
tgcccgcaggcggccctggcggtcgaggccctcatcgccgaggccggcgcgccggacggg
gcctacgtcaacctgttcgccgacagcgggcagatcgcgcacctcatcggcgacccacga
gtgcagggcgtgtccctgaccggctccgaacgtgccggttccgcggtcgctgagatcacc
ggccgccacctgaagaagtacgtgctcgaactcggcggttccgacccgttcatcgtgctc
gacggcgaaaacctggacagcaccgtcgacgacgcggtcggcggccgcctgttcaacggc
ggccaggcgtgcaccgcgtccaaacggttcatcgtgctggcggacgtctacgccgcattc
ctcgacaagttcgtcgccaggatgcggcagtggcggccgggggagcccgccgacccggcc
acccggctggggcctctgtcctcgcaccaggtggtggacgacctcgaagagcaggtggcg
gacgcgctggcgaagggggcgacgttgcacaccggcggccgccgcggtgacggtcccggc
gcctggtacgagcccacggtgctcacggacgtgacgcccgggatgcgggcctactccgag
gagctgttcggtccggtcgccgtggtgcaccaggccggatcggtggaggaagcggtcgcg
ctggcgaacgagtcgccgtacgggctggcggcctcgatctacaccgccgacgtccagcgg
gcccgcgcgctggcccgggacctggagtgcggcatggtgtggatcaacggcacgagcaag
agcgcaccggatctgccgttcggcggcgtgaagcggtcgggcgtcgggcgggagctgtcc
gagctgggcatcagcgagttcgccaacaagaagctggtccggatcccgcgcgtccggtcg
tga
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