Amycolatopsis methanolica: AMETH_5252
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Entry
AMETH_5252 CDS
T03230
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
amq
Amycolatopsis methanolica
Pathway
amq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
amq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AMETH_5252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amq03400
]
AMETH_5252
Enzymes [BR:
amq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AMETH_5252
DNA repair and recombination proteins [BR:
amq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AMETH_5252
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AIJ25344
UniProt:
A0A076MWU0
LinkDB
All DBs
Position
complement(5420187..5421188)
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AA seq
333 aa
AA seq
DB search
MADWRRHTIRRSIGGMPLPEPVAPMLAVPGPVRDSEGWAFEWKYDGVRCQAALSGGEVRL
YSRRLRDVTATYPELAVLGGDPRTLLIDGEVVALDEDGRPDFGRLQQRMNLAAPSPARLS
SVPVVFFAFDLLREGSRDCTGLPYEERRERLLGLGIDRPEVRVRRHFLASDVEGAELLSA
AREVGLEGLVSKRLGSVYQPGVRSPDWVKTPLTRTQEVVIAGWTAGEGRRSRTFGALLLG
LHDETGLRFAGHVGTGFTDRMLDDLQARLRPLARRTSPFDSPVPREYARNAHWVEPELVG
EVEFRQWTSDGRLRAPSWRGLRPDRRPEEVTLA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
gtggccgactggcggaggcacacgatccggcgcagcatcgggggcatgccgctgcccgag
cccgtcgccccgatgctggccgttcccggacccgtgcgggacagcgagggctgggcgttc
gagtggaagtacgacggggtgcggtgccaggccgcgctgtccggcggcgaggtccggctc
tactcgcggcggctgcgtgacgtcaccgccacctatccggagctggccgtgctcggcggc
gatccccgcacactgctgatcgacggcgaggtcgtcgcgctcgacgaggacggcaggccg
gatttcgggcgcctgcaacagcgcatgaacctggccgcgccctccccggcgcggctgtcc
tcggtgcccgtcgtgttcttcgcgttcgacctgctgcgcgagggatcgcgggactgcacc
ggcctgccctacgaagaacgccgggaacggttgctgggcctcggcatcgaccggccggag
gtgcgggtgcggcggcacttcctcgcgtccgacgtggagggtgcggagctgctgagcgcg
gcgcgcgaggtcggcctggaggggctggtgtccaagcggctcggctcggtctaccaaccc
ggcgtgcggtcgccggactgggtgaaaacaccgctgacccgcacccaggaggtggtgatc
gcgggctggaccgccggcgaggggcggcggtcccgcacgttcggcgccctgctgctcggc
ctgcacgacgagaccgggctgcgcttcgccgggcacgtcggcaccgggttcaccgaccgc
atgctcgacgacctgcaggcccgcctgcgcccgctggcccgccgcacgagcccgttcgac
agcccggtgccccgcgagtacgcccgcaacgcacactgggtggagccggaactggtgggc
gaggtggagttccggcagtggacgtcggacgggcggttgcgggcgccgtcgtggcggggg
ctgcggccggaccggcggccggaggaggtcacgctcgcctga
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