Actinoplanes missouriensis: AMIS_3580
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Entry
AMIS_3580 CDS
T01795
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ams
Actinoplanes missouriensis
Pathway
ams03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ams00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AMIS_3580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ams03400
]
AMIS_3580
Enzymes [BR:
ams01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AMIS_3580
DNA repair and recombination proteins [BR:
ams03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AMIS_3580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
BAL85578
UniProt:
I0GXU1
LinkDB
All DBs
Position
374624..375553
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AA seq
309 aa
AA seq
DB search
MKTPDRFVVTVEGRDLELSNLDKVMYPAAGFTKGEVIDYYTRIAPVMLPHLRDRPATRIR
FPNGVDGMHFFEKNKPGGTPDWVRLETLPVPGSTKSRETIEFVVVDDLPTLVWLANLAAI
ELHTPQWRIGADPDLMVVDLDPGAPAGLRECCAVATLMRDRLAADGIDAYPKTSGKKGMQ
LCCPISGTQDSEVVSAYAKKVADELAAMVPGSITAKMAKAIRPGKIFIDWSQNAAAKTTV
TPYSLRAGEGPTGSAPLTWDEVIAMATGEVEARQFGAGEVLERVEEHGDLMAALSEPGPA
VPVSYRRRS
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgcctgaccggttcgtggtcaccgtcgagggacgcgacctcgagctgtccaac
ctcgacaaggtgatgtacccggcggccggattcaccaagggcgaagtgatcgactactac
acccggatcgccccggtcatgctgcctcacctgcgcgatcgcccggccacccggatccgc
ttccccaacggcgtcgacggcatgcacttcttcgagaagaacaagcccggaggtacgccg
gactgggtgcgcctggagaccctgccggtgcccggttccaccaagagccgggagaccatc
gaattcgtggtcgtcgacgacctgcccacgctcgtctggctggcgaacctggccgcgatc
gaactgcacaccccgcagtggcggatcggcgccgacccggacctgatggtggtcgacctg
gacccgggagcgccggccgggctgcgggaatgctgcgcggtggcgaccctgatgcgggac
cggctcgccgccgacgggatcgacgcctatccgaagacgtccgggaagaagggcatgcaa
ctgtgctgcccgatctccggcacacaggactccgaggtggtctccgcgtacgcgaagaag
gtcgccgacgaactggcggcgatggtccccggctcgatcaccgcgaagatggccaaggcg
atccggcccggcaagatcttcatcgactggagccagaacgcggcggcgaagacgacagtg
acgccgtattcgctgcgggcgggggaggggccgaccggttcggcgccgctgacctgggac
gaagtgatcgcgatggcgaccggggaggtggaggcgcggcagttcggggcgggcgaggtg
ctggagcgggtcgaggagcacggtgatctgatggcggcgctgtccgaacctggccccgcc
gtgccggtgtcgtatcgacgtaggtcgtga
DBGET
integrated database retrieval system