Aeoliella mucimassa: Pan181_42000
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Entry
Pan181_42000 CDS
T06952
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amuc
Aeoliella mucimassa
Pathway
amuc03030
DNA replication
amuc03410
Base excision repair
amuc03420
Nucleotide excision repair
amuc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amuc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pan181_42000 (ligA)
03410 Base excision repair
Pan181_42000 (ligA)
03420 Nucleotide excision repair
Pan181_42000 (ligA)
03430 Mismatch repair
Pan181_42000 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amuc03032
]
Pan181_42000 (ligA)
03400 DNA repair and recombination proteins [BR:
amuc03400
]
Pan181_42000 (ligA)
Enzymes [BR:
amuc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Pan181_42000 (ligA)
DNA replication proteins [BR:
amuc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Pan181_42000 (ligA)
DNA repair and recombination proteins [BR:
amuc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Pan181_42000 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pan181_42000 (ligA)
MMR (mismatch excision repair)
DNA ligase
Pan181_42000 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Pan181_42000 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
PTCB-BRCT
HHH_5
BRCT_2
DNA_ligase_ZBD
zf-IS66
Glyco_hydro_99
Bap31_Bap29_C
Amnionless
Motif
Other DBs
NCBI-ProteinID:
QDU57975
UniProt:
A0A518ATD4
LinkDB
All DBs
Position
5126724..5128868
Genome browser
AA seq
714 aa
AA seq
DB search
MSAADRIEKLRHEIREHDRRYYVDATPSISDREYDRLLDELKSLEAEHPELLTNDSPTQR
VAGTPIDGFETVAHARPMYSIDNSYAADELHKWADRLPPEVDRFLIDPKIDGVAISLRYE
EGHLVLAATRGDGQQGDDVTQNARTIRSIPLSLDVSSTPPPAVLEVRGEVYCPWQVFQKW
NEELEEEGQQQLANPRNATAGLLKRHDTTIVAKRRLEFCVHGRGELDGVTATSVTEFYEQ
VAEWGLPTNPYARTASSIDEVLEVIDAFDTTRHTLPYAVDGMVVKVDQFDLQDELGFTSR
FPRWCIAYKYAAEQATTKLLEIQWQVGKTGKLTPRAKLEPVFVAGTTVQHATLHNMGEVL
GKDVHIGDTVILEKAGEIIPQVVEVVKSERPKTAEPAVAPECCPECGGSISIEYDKRRVH
DIESWEARVERERKRAEKNSEEPADIPKPDPLSGLDESARYCMNPECPAQFRERLAHFAG
RGQMDIDGMGIKVIEQLMEADLVKTIGDVFRLHERRDDVLALERMGTRKAENLFAAIDAS
KQRGLARTLASLGIRHVGSTASRILAEHYRTIDGLLEASEEEIATFKIGENESGIGPEIA
RSIHTFLHSSTGAAVIAELREVGVSLEMPEAETSGSAGTSLAGKSLVVTGTLTKYSRKEI
EELIVQHGGKASSSVSKSTSYLVAGENAGSKLDKANSLGVPVLSEADFEKLITE
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccgccgaccgcatcgaaaaacttcgccacgagattcgcgagcacgatcgccgc
tactatgtcgacgcgaccccttcgatcagcgaccgcgagtacgatcgcttgctcgacgaa
ctaaaatcgcttgaagccgagcaccccgaactgctcacgaacgatagccccacgcagcgg
gtagccggtaccccgatcgatgggttcgagacggtcgcccacgcccgaccgatgtactcg
atcgacaacagttacgcggccgacgaattgcacaaatgggccgatcgcctaccgccggaa
gttgaccggtttttgatcgatcccaagatcgatggcgttgccatcagcctgcgttacgaa
gagggacacctggtgctggctgccacccgcggtgatggccaacaaggcgacgatgtcacc
cagaacgcccgcacgattcgctcgattccgttgtcgctggatgtcagcagcactcccccg
cctgcagtgctcgaagtgcgcggcgaggtctactgtccctggcaggtgttccagaagtgg
aacgaagaactcgaagaggaaggacaacagcaactagctaatccgcggaacgcgaccgca
ggtctgctgaaacgacacgatacgacgatcgtcgccaagcgccggttggagttctgcgtg
cacgggcgaggcgagctcgatggtgtcacggcgaccagcgtcacggagttttacgagcag
gttgccgaatggggactccccacaaatccctacgctcgaaccgccagcagtatcgacgaa
gtgttggaggtgatcgatgcgttcgacaccacgcgacatacgttgccttacgcggtcgac
ggcatggtcgtaaaagttgatcaattcgatctacaggacgaactcggtttcacgagccgg
ttcccacggtggtgcattgcttacaagtacgcggccgagcaggcgactaccaagctgctc
gagattcaatggcaggtcggcaagacaggcaaactcaccccacgggcgaagctcgaacct
gtgttcgtcgctggcaccacggtgcagcacgcaacactgcacaacatgggcgaggtgctt
ggcaaagacgtccacatcggcgataccgtgatcctcgaaaaagcgggcgagatcattccg
caggtggtcgaggtggttaagagcgaacgcccgaagaccgccgagcctgcggtggctccg
gagtgttgtcccgagtgcggcggcagcatttctatcgagtatgacaagcgtcgcgttcac
gacatcgaatcgtgggaggcacgcgtggagcgcgaacgcaagcgagcggagaaaaactcg
gaagagccagccgacatccctaagcccgatccgctgtcggggctcgacgagtcggcacgg
tactgcatgaatccggagtgccccgcacagttccgcgaacgcctggcccacttcgccggc
cgtgggcaaatggacatcgacggcatgggcattaaagtgatcgagcaattgatggaagcc
gatctcgtgaaaacgatcggcgatgtgtttcggttacacgaacgacgcgacgacgtgctc
gccctcgaacggatgggcacacggaaagccgagaacttgtttgccgcaatcgacgcgtcg
aaacagcggggactcgcacgcaccttggcgtcgctcggtattcggcatgttggctctacc
gcttctcgaattcttgcggagcactatcgtacaatagatggtttgctggaagcgagcgaa
gaagagattgccaccttcaaaatcggagaaaacgagtcgggcatcgggcccgagatcgcc
cgctcgattcatacgttcctccactcgagtaccggcgccgcggtgattgccgaattacgc
gaggtaggtgtttcgctggagatgccggaggccgaaaccagcggatcggccggcacctcg
ctggcgggtaaatcgttggtggtcaccggaacgctgacgaaatactcgcgaaaagaaatc
gaagagctaatcgtacagcatggcggcaaggctagcagcagcgtgtcgaagtcgaccagc
tacttggtagctggcgaaaatgcgggcagcaaactggacaaagcaaactcactgggcgta
ccggtgttgagcgaggcggatttcgaaaaactgattactgaataa
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