Amycolatopsis sp. YIM 10: YIM_17035
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Entry
YIM_17035 CDS
T06270
Symbol
rhsC4
Name
(GenBank) Putative deoxyribonuclease RhsC
Organism
amyy
Amycolatopsis sp. YIM 10
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
RHS
FlgD_ig
WXG100
PPE
EspA_EspE
Motif
Other DBs
NCBI-ProteinID:
QFU88587
UniProt:
A0A5P9PL33
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All DBs
Position
complement(3462245..3466708)
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AA seq
1487 aa
AA seq
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MPEGNPLVAQAQSQTTGVTGIGIAESAVDLANGVSDGSWVEAGLGAVGVGLEVLSMVVDP
IGTLASYGVSWLIEHVQPLKEALDWLAGDPPVIQSFSETWANVAAEVNAIAGDLGNEVTN
GTAGWQGEGADAYRGAAAEQADALAGAASLADGISAGVMIMGTVVAAVRELVRDLVAELV
GKLITWALEAAATLGFATPAIAVQATTAITKTISKISDFIRKLVKTIGNVSPKIRKIIDK
LGEIIEKLSKMLRKGGKPGSSTTPSGAKPSTTKTPDTTPNSPDTTPSGTDTTPDGGSPTT
PDGGKPGNGNQPDSPSNRPDNPQDTKTPPERRYCKDDPVDVVSGEVILSQVDLALPAALP
LVIRRVHVSSYRAGRALGPNWASTVDQRLEFDSAGIVYVSDDGTLLTYPDPVADHAPVLP
AVGPRWPLTRTGDGYLISKPDANQFLHFAGGGRLDAVEDRNRNRIDLDYTPGGTLTQLRH
SGGYRVLVEQSGGRIARLVLAGESGESNADIEVVRYEYDDRGRLAKVFNSSTKALQFSYD
SDGRLVRWDDRTGSWYGYRYDARGRCVANEGAGGFLNGTFDYDADAMTTVFTDALGNRTT
YRYDEARNVVELTDPLGNVTHQEWNDRDQLVTRRDPLGRVTRFDYDEHGNLVTATRPDGS
QGLAEYNEFGLPTTQVDPGGAVWRYDYDERGNIMAATEPSGAVTRYLRDERGNLVGKTDP
LGATTRLEVSAAGLPVAVTDALGATTRYTRDQFGRLSTVVDPLGNRSSISWTVEGKLLAR
TYADGTVERWRYDGEGARVEHIDALGQSTHTETTHFDLVSAITGPTGARTEFEYDTNLRI
TAVRNAAGLVWRYHYDAAGNRVGETDYNGRELRYTYDPAGQLVSVVNGAGETTSFVYDQL
GRIAARHSGSDVSTFEFDEAGSLVRAVNADAEVTMRRDASGRVLAETVNGRTMSYRYDAA
GRMVHRRTPAGQESTWEFDQLGRASRLVSGGRTLSFGYDVAGREVERLLDTGLIMASEWD
NRHRLAGQTVSTVTGHAPQATVVQQRHYTYRADDAVLAIQDALGGTRNFGVDPIGRITAV
DAPGRQERYAYDLAGNLVREPSAPEVPVARVTGTVMHESGDVRYQYDRQGRVVLKQKKRL
SRKPDNWHYHWDAEDRLVGVVTPDGTHWRYRYDAFGRRIAKQRLGPDGAVAGQVLFTWDG
STLAEQIGPHGEAVTWDFDGRNRPVTQIEHAPQAEIDRRFYAIVTDLVGTPTELVDDAGQ
LAWRAQTTLWGEALAALNQRTTTPLRFPGQYHDDETGLHYNFFRYYDPETGRYQSNDPLG
LFGTPNPHAYVADPMRLTDPLGLMTCEEAEDALRNLDPNDPANEARRSEAWNKLYEDAEN
HPDRIAERLQAERERLVRQAGNEIHRGQNVPPQLEGGRVDAPQAHVPGSQYHVQGRGNGS
PGLNMDGSFHDGDPGWNRRTYEWAYDHGFAWPTGGQWAGQSPGTHPW
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgagggaaatccgctggtcgcgcaggcgcagtcgcagaccaccggggtgaccggg
atcgggatcgccgagtccgcggtcgacctggccaacggcgtgtccgacggctcctgggtc
gaagccggactcggcgcggtcggcgtcggactcgaagtcctctcgatggtcgtcgacccg
atcggcacgctcgcttcctacggtgtctcgtggctgatcgagcacgtgcagccgctcaag
gaggcactcgactggctggccggggacccgccggtgatccagtcgttttccgagacctgg
gccaacgtcgccgccgaggtcaacgccatcgccggcgacctgggcaatgaggtcaccaac
ggcaccgccggctggcaaggcgaaggcgccgacgcctaccgaggcgccgccgccgaacaa
gccgacgcactggccggagccgcctcgctggccgacggcatttccgccggcgtgatgatc
atgggcaccgtcgtcgccgcggtacgcgaactggtccgcgatctggtcgccgaactggtc
ggcaagctcatcacctgggcgctggaagccgccgccaccctgggcttcgccacccccgcg
atcgccgtgcaggccaccaccgccatcaccaaaaccatcagcaagatcagcgacttcatc
cgcaaactggtcaagaccatcggcaacgtctccccgaagatccgcaagatcatcgacaaa
ctcggcgagatcatcgaaaagctgtccaaaatgctccgcaaaggcggcaaacccggcagc
agcaccaccccctccggcgccaagcccagcaccaccaaaaccccggacaccacccccaac
tcccccgacaccaccccttccggcaccgacaccacccccgacggcggcagccccaccacc
cccgacggcggaaaaccgggcaacggcaaccagccggactcaccgagcaaccggccggac
aacccgcaggacaccaaaaccccgccggagcggcggtactgcaaggacgacccggtcgac
gtggtctccggcgaggtcatcctcagccaggtcgatctcgcgctgcccgcggcgctcccg
ctggtcatccgccgcgtgcacgtctcgtcctaccgcgcgggccgggcgctcgggccgaac
tgggcgtccacagtggaccagcggctggagttcgacagcgccgggatcgtctacgtctcc
gacgacggcaccctgctgacctatcccgatcccgtggccgaccacgccccggtgctgccc
gccgtcggcccccggtggccgttgaccaggaccggcgacggttacctgatcagcaaaccg
gacgccaaccagttcctgcacttcgccggtggtggccgcctggacgcggtcgaggaccgc
aaccggaaccgcatcgacctcgactacacccccggcggcaccctcacgcaactgcggcac
agcggtggctaccgcgtgctcgtcgagcaaagcggcggccggatcgcccggctcgtgctg
gccggcgaatccggcgagtccaacgccgacatcgaggtcgtccggtacgagtacgacgac
cgcggccgcctcgccaaggtgttcaattcctcgaccaaggcgctccagttcagctacgac
agcgacgggcggctggtccgctgggacgaccggaccggttcctggtacggctaccgctac
gacgcgcggggccgctgcgtggccaacgaaggcgcgggcggtttcctcaacggcacgttc
gactacgacgccgacgccatgaccaccgtcttcaccgacgcgctcggcaaccgcaccacc
taccgctacgacgaagcacgcaacgtcgtcgagctgaccgacccgctcggcaacgtcacc
caccaggaatggaacgaccgcgaccagctggtcacccgccgcgaccccctcggccgcgtc
acccggttcgactacgacgagcacggcaacctggtcaccgcgacccggcccgacggcagc
cagggcctggccgagtacaacgagttcggcctgcccaccacgcaggtcgacccgggcggc
gcggtgtggcgctacgactacgacgagcgcggcaacatcatggcggcgaccgaaccctcc
ggcgcggtcacccggtacctgcgtgacgagcgcggcaacctggtcggcaagaccgacccg
ctgggcgccaccacgcgcctcgaggtcagcgcggccgggctgccggtggcggtgaccgac
gcgctcggcgcgaccaccaggtacacccgcgaccagttcggcaggctgtccaccgtcgtc
gacccgctgggcaaccggtcctcgatcagctggaccgtcgaaggcaagctgctggccagg
acctacgccgacggcacggtcgagcggtggcgctacgacggcgaaggcgccagggtcgag
cacatcgacgcgctcggccagtcgacgcacaccgagacgacccacttcgacctggtctcg
gcgatcaccggtcccaccggggcgcgcaccgagttcgagtacgacaccaatctccggatc
accgcggtgcggaacgcggcgggcctggtctggcggtaccactacgacgccgccgggaac
cgcgtcggcgaaaccgactacaacggccgcgaactccgctacacctacgaccccgccggt
cagctggtcagcgtggtcaacggggcaggcgagacaacgagcttcgtgtacgaccagctc
ggacggatcgccgcgaggcacagtggttcggacgtgtccaccttcgaattcgacgaagcg
ggttccctggtgcgggcggtcaacgccgacgcggaggtgaccatgcggcgcgacgcgagc
ggccgggtcctcgccgagacggtcaacggccgcaccatgtcctaccggtacgacgccgcg
ggccggatggtccaccggcggaccccggccggccaggagagcacctgggagttcgaccag
ctgggccgggcctcgcgcctggtcagcggcgggcggacgctgtcgttcggctacgacgtg
gccggccgggaggtcgaaaggctgctcgacaccggcctgatcatggccagcgaatgggac
aacaggcaccgcctggccggccagaccgtcagcacggtgaccgggcacgcgccgcaggcg
accgtggtgcagcagcggcactacacctaccgtgccgacgacgcggtgctcgccatccag
gacgcgctcggcggcacgcggaacttcggggtggacccgatcggccggatcaccgcggtg
gacgcgccgggcaggcaggagcgctacgcctacgacctcgccggcaacctggtccgcgag
ccgtcggctccggaagtcccggtcgcgcgggtgaccggcacggtcatgcacgagtccggt
gacgtgcgctaccagtacgaccggcagggccgggtggtgctgaagcagaagaagcgcctg
tcccgcaagccggacaactggcactaccactgggacgccgaggaccggctggtcggcgtc
gtcaccccggacggcacccactggcgctaccgctacgacgcgttcggccgccggatcgcc
aagcagcggctcggccccgacggcgcggtggccggccaggtgctgttcacctgggacggc
tcgaccctcgccgagcagatcggcccgcacggtgaagcggtgacctgggacttcgacggc
cggaaccgcccggtgacgcagatcgagcacgctccgcaggccgagatcgaccggcggttc
tacgccatcgtcaccgatctcgtcggcacacccaccgagttggtcgacgacgccgggcag
ctcgcctggcgcgcgcagaccacgctgtggggcgaggcgctcgccgcgctgaaccagcgg
accaccaccccgctgcgattccccggccagtaccacgacgacgaaacggggctgcactac
aacttcttccggtactacgacccggaaaccgggcggtaccagagcaacgacccgctcggc
ctgttcggcacgccgaacccgcacgcctacgtcgccgacccgatgcggctgaccgacccg
ctcggcctgatgacctgcgaggaagccgaggatgcgctgcgcaacctcgatccgaacgac
ccggccaacgaagccaggcgcagcgaggcatggaacaagctgtacgaggacgccgagaac
caccccgaccggatcgccgaacggctgcaggccgaacgggaacggctcgtccgccaagcg
ggcaacgagatccaccgcgggcagaacgtgcctccccagctcgagggcgggcgggtcgac
gccccacaggcgcacgtgccgggcagccagtaccacgtgcagggccggggcaacggctcg
ccgggcctgaacatggacggcagtttccacgacggcgaccccggctggaaccggcgcacc
tacgaatgggcctacgaccacgggttcgcttggccgacgggcgggcagtgggccgggcag
agcccgggcacgcacccgtggtga
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