Amycolatopsis sp. YIM 10: YIM_32405
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Entry
YIM_32405 CDS
T06270
Symbol
rhsC6
Name
(GenBank) Putative deoxyribonuclease RhsC
Organism
amyy
Amycolatopsis sp. YIM 10
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
RHS
WXG100
T7SS_signal
PPE
OCRE
DUF948
EspA_EspE
Motif
Other DBs
NCBI-ProteinID:
QFU91642
UniProt:
A0A5P9PU50
LinkDB
All DBs
Position
complement(6844928..6849745)
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AA seq
1605 aa
AA seq
DB search
MTNPLVATTQDSTTAVSGAPLLESASDLKASIESGDWAAGALGVAGAGLDALGAAMDPFG
TILSHGVGWLMEHVGPLKDALDALAGDPAQISAHADTWRNVAVELGAISADLTTMVTADT
AGWTGAAADTYRARGADTTKLLAATQNAAEGAAGGVRTAGELVAAVRGLVRDIIAELVGR
LISWALQVLGTLGIGTAWVVPQVARAVASTATKIADVTGKVVTALGELVPLLKRTGDVLG
DVSGALRHIDAGAKTTPQALDALPSPKIADLPTSGGGGARDVPSPDGAVVPPVTAGGTTP
SSAPGTRPLRDRGNPAEHNIPIADRTLCADPIDVATGWMVLAQSDAEFAGTLPLAVSRTH
ISSYRFGRLFGPSWASTLDQRLEAEPDGLHLALADGSLLTFPVPAGTGPVVPDSGPRLRL
WRDANGYVVGDPATDRLLFFGEGTGRTMPLLAIGDADGNRVGIRYDDAGLPVELRHSAGY
RLLVETSGGLVTALRLPGAETAIARYHYDTRGRLAEVVDAQGVPTRFTYDADGRIVRWED
RNGRWYRYGFDATGRCVRAEGSGGYLDCALEYDRTNLVTRFTDSLGATTLYQFDDRLRVV
GEVDPLGHASTVDMDEYGRVRGRTDALGHTTTYQLDEAGNVVRVTRPYGGVALAEYDERD
QPVMRTGPDGAVWRQEFDTRGKLVRTIDPLGAVTEYEYDDAGNVAVLTDALGGVTRIERN
AAGLPVAVTDPLGAVTRYEYDEFGRTSAIIDPLGAVTRMRWAANGDLRERIEPDGSTWTW
SGTAESNTEHAVDARGMVTSTEFGQFDLPIAETGPDGHRVARTYDTELRLVAVTNEQGLV
WRYTYDAAGNVSGETDFNGRTTRYGYDAANRLVLIDRGAGETIHLDRDPLGRIVSRRAGT
EVSVFTYDGADRMISARNDTAEVVFTYDALGRVVAESVNGRVVRSGYDALGRRISRRTPS
GAESSFGYDAAGRPVEVRTGGRLLRFGYDECGRELSRWLDGGRSELRQHWDPQNRLIGQT
LFSGDRITQRREYAYLRDGHLSAIADAISGPRALEVDETGRVRTVIGPGCREDYTYGPSG
AITHAQWPARPDVAIGPRHYHGTLLTAAGDTVYRHDANGRTVQRRCRERTWSYHWNPDDR
LTSVGTPDGWWWVYQYDALGRRIAKQRLDSAGRVAERIDFTWDGPELAEEVRAGVIVVWD
IEPGSGRPIAQLERHRNAPGERFHTIVTDLVGSPAELVDEAGEVAWHLHTTLWGKVLGEP
GRAYTPLRFPGQYHDAETGLHYNFYRYYDPDTGRYLSHDPLGLEPAPDSLAYVGNPAHLI
DPLGLTGVTPCRVAGGGKRPRADSTGASGSGPQQPKKAKASYDEGTHGAKNREQKRLSDL
FANELKAPGGPAKQKVSGDTHQSEHPIGYEVLGRGSEAKRGAGEQQKLLENHAPAYQEEL
RSHREHIGTGTSSRTAESGFTAQSYRNSQRNALEAGDPNTAIQLNQLDYAHQKTFKDMTG
TLPGNIADDSYHHMVDKAEGKGVTYSTGKGTNETTPPLSAHDTKELHAAREAARTGKFPE
HKTYEQELAEIHERTYPKPTQRDWEALERGNYEKPVYDPKDTDTD
NT seq
4818 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaatcctcttgtcgccaccactcaggattccaccaccgcggtgagcggcgcgccg
ctgctggaatccgcgtcggatctgaaggcctccatcgaaagcggggactgggccgcgggc
gcgctcggcgtcgcgggtgccggactggacgcgctcggcgcggccatggaccccttcggc
accattctctcccacggcgtggggtggctgatggaacacgtcggcccgctgaaggacgcg
ctggacgcgctcgccggggacccggcccagatctcggcgcacgccgatacgtggcggaac
gtcgccgtggaactgggtgcgatcagcgccgacctgaccacgatggtcaccgccgacacc
gcgggctggaccggtgccgcggccgacacctaccgcgcgcgcggcgcggacaccacgaag
ctgctcgcggccacgcagaacgcggccgagggtgcggccggaggggtccggacggcgggt
gagctggtggcggccgtgcgcggcctggtccgcgacatcatcgccgaactggtcggccgg
ttgatcagctgggcgttgcaggtgctcggcaccttgggcatcggcacggcctgggtggtg
ccgcaggtggcccgtgcggtggcgagcaccgcgacgaagatcgcggacgtcaccggcaag
gtggtcaccgcgctgggcgagctggtcccgctgctgaagcgcaccggtgacgtcctgggc
gacgtgtcgggggcgctgcggcacatcgacgccggagcgaagacgacaccccaggcactg
gacgccttgccgtcgccgaagatcgccgacctgccgacgtccggcggcggtggcgcgcgg
gacgtcccgtcaccggacggcgcggtggtgccgccggtcaccgctggcggcacgacgccc
tcatcggcaccgggcacgcgcccgctgcgggaccgcggcaacccggccgagcacaacatc
ccgatcgcggaccgcaccctctgcgccgatccgatcgacgtcgccaccggctggatggtc
ctggcccagtccgatgcggagttcgccgggaccctgccgctcgcggtttcgcgcacgcac
atctcgtcgtaccgattcggccgcctgttcggcccgtcctgggcgtccactctggaccag
cggctggaagcagaaccggacggattgcacctggcgctggccgacggctcgctgctgacc
ttcccggtgcccgccggtacgggcccggtggtgccggacagcgggccgcgcctgcgcctg
tggcgggacgcgaacggttacgtggtcggcgatccggccaccgaccggctgctgttcttc
ggcgaggggaccgggcgcacgatgccgttgctggccatcggcgacgccgacggcaatcgc
gtcggaatccggtacgacgatgccgggctgcccgtcgaactgcggcactccgccggatac
cggctgctggtggagacttcgggcgggctggttaccgcgcttcgcttgccaggcgcggaa
accgcgattgccaggtatcactacgacacgcggggacggctggccgaggtggtcgacgcc
cagggcgtgccgacgaggttcacctacgacgccgacggccggatcgtccgctgggaggat
cgcaacggccgttggtaccgctacggtttcgacgccaccggccgctgcgtccgcgccgag
ggctctggcggctacctggattgcgcgctggagtacgaccggacgaacctggtcacccgg
ttcacggattcgctcggtgcgaccacgctgtaccagttcgacgaccgcctgcgggtggtg
ggcgaggtcgacccgctgggccatgcgtccacagtggacatggacgagtacggccgggtg
cgcggccgcacggacgcgctgggccacaccaccacctaccagctcgacgaagcggggaac
gtggtgcgcgtgacgcggccctacgggggcgtcgcactggccgagtacgacgaacgcgac
cagccggtgatgcggaccgggcccgacggggcggtctggcgccaggagttcgacacgcgc
ggcaagctcgtgcgcaccatcgatccgctgggcgcggtcaccgaatacgagtacgacgac
gccggcaatgtcgccgtgctcaccgacgcgctcggtggtgtcacccggatcgagcgtaac
gcggcgggactgccggtcgccgtcaccgatccgctgggcgcggtaacccggtacgaatac
gacgaattcgggcgtaccagcgcgatcatcgatccgctcggcgcggtgaccaggatgcgc
tgggcggccaacggggacctgcgcgaacggatcgagccggacgggtcgacctggacatgg
agcggtaccgccgagagcaacaccgagcacgccgtcgacgcgcgcggcatggtcaccagc
accgagttcggccagttcgacctgccgatcgccgagaccgggccggacgggcaccgggtc
gcccgcacctacgacaccgaactgcggctggtggcggtcaccaacgagcagggcctggtg
tggcgctacacctacgacgccgcgggaaacgtgagcggcgagaccgatttcaacggccgc
accacccggtacggttacgacgccgcgaaccggctcgtgctgatcgaccggggcgcgggg
gagaccatccacctcgaccgggatccgctgggccgcatcgtctcccgccgggccggtacc
gaggtctcggtcttcacctacgacggtgcggaccggatgatctcggcgcgcaacgacacc
gccgaggtcgtgttcacctacgacgcgctcgggcgggtggtggccgagtcggtcaacggc
cgcgtggtgcgctccggctacgacgcgctcggccgccggatctcgcgccgaaccccctct
ggcgcggaatcctccttcggctacgacgcggcgggccgtccggtcgaagtgcgcaccggc
ggcaggctgctgcggttcgggtacgacgagtgcggccgggaactgtcgaggtggctggac
ggcggccgatcggaattgcgccagcactgggatccccagaaccggctgatcgggcagacc
ctgttcagcggcgaccggatcacgcagcggcgcgagtacgcctacctccgcgacggccac
ctctcggcgatcgccgacgccatttccgggccgcgcgcgctggaagtcgacgagaccggc
cgggtgcgcacggtgatcgggcccggctgccgggaggactacacctacggtccgtccggc
gccatcacgcacgcccagtggccggcgcggccggacgtggcgatcgggccacgccactac
cacggcacgttgctcaccgccgctggggacacggtctaccggcacgacgcgaacggccgc
acggtgcagcgccgctgtcgtgagcggacgtggtcctaccactggaatccggacgaccgg
ctcacctcggtcggcacgccggacggctggtggtgggtgtaccagtacgacgcgctcggc
cgccggatcgcgaagcagcggctcgacagcgccggccgggtcgccgagcgcatcgacttc
acctgggacggcccggaactggccgaggaggtccgggcgggcgtcatcgtggtgtgggac
atcgaacccggctccgggcggccgatcgcccagctcgaacggcaccggaacgcgccagga
gaacgcttccacaccatcgtcaccgatcttgtcggctccccggccgaactggtcgacgag
gcgggtgaagtggcgtggcacctgcacaccacgctgtggggcaaggtgctcggcgagccg
gggcgcgcctacaccccgctgcgcttccccggccagtaccacgacgcggaaacggggctg
cactacaacttctaccgctactacgacccggacaccggccggtacctgtcccacgacccg
ctcggcctggaaccggcgccggattcgctggcctacgtcggcaacccggcgcacctgatc
gatccgctcggcctgaccggggtgaccccgtgccgcgtcgccggtggcggcaagcgcccg
cgtgcggacagcaccggcgcttccgggtcgggcccgcagcaaccgaagaaggcgaaggcg
agctacgacgaaggcacgcacggcgcgaagaaccgggagcagaagcggctgagcgacctg
ttcgcgaacgaactcaaggcaccgggcggcccggcgaagcagaaggtcagtggcgacacc
caccagtcggagcacccgatcggttacgaggtgctcggcaggggcagtgaggccaagcgg
ggtgcgggcgagcagcagaagctgctggagaaccacgccccggcctaccaggaggaactg
cggtcgcaccgggagcacatcggcaccggcaccagttcacggaccgcggagtccggtttc
accgcacagtcctatcggaattcgcagcgcaacgcgctggaagcgggcgacccgaacacg
gcgatccagctcaaccagctcgactacgcgcaccagaagaccttcaaggacatgacgggc
acgctcccgggaaacatcgcggacgattcctaccaccacatggtcgacaaggccgaaggc
aagggtgtcacctattcgacgggcaagggcaccaacgagaccacgccgccgctgagcgcg
cacgacacgaaggaactccacgccgctcgtgaggccgcccgtaccggcaaattcccggaa
cacaagacctacgaacaggaactggccgagatccacgagcgaacctacccgaagcccaca
caacgcgactgggaggcgctggaacgcggaaactacgaaaagccggtgtacgacccgaag
gacacggacaccgactga
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