Amycolatopsis sp. YIM 10: YIM_32825
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Entry
YIM_32825 CDS
T06270
Symbol
ddpD
Name
(GenBank) putative D,D-dipeptide transport ATP-binding protein DdpD
KO
K02031
peptide/nickel transport system ATP-binding protein
K02034
peptide/nickel transport system permease protein
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
YIM_32825 (ddpD)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
amyy02000
]
YIM_32825 (ddpD)
Transporters [BR:
amyy02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
YIM_32825 (ddpD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
BPD_transp_1
oligo_HPY
OppC_N
AAA_21
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QFU91726
UniProt:
A0A5P9PTK4
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Position
6939883..6941802
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AA seq
639 aa
AA seq
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MTVVPEQVLDTAAVPGRAGAPKLWRTVLRRPIAAVSAGYLLALVLASVLAPVLAPYGPAA
TDLDQVLAGPTTAHPLGTDSLGRDVLTRLMYGGQVSLLNAAVVVLTVLLVGVSTGVAAGY
LDGWLDRVATWVLDMMLAIPVIVTLLAVLAAVDGRQLIGMVALGVLVSPGLARVVRGATL
AVREELYIAAARVSGLPNRHIVVKHVLPRVSGPIIVQISLLAGGALLIDAGLSYLGFGAQ
PPTATWGNTIAEAAAVIDRQPWLLIPPGVALGLAILAFGLLGDTVRDATAARSGRTPARV
RPPREVRPPWPGPAPRSLLSIQDVSITLAPDTVVAERLDLRIDAGETVGLIGESGCGKSI
TARAVLGLLPVGARVSAGNIFFDGTELTRLGQRETRRLRGSRIALVSQEPVSGLDPVYTA
GRQLGELVRRHHGGSRRAVRTHSLDLLRSVDFPDPRAVADRYPHELSGGMAQRVAIAMAL
AGAPDLLIADEPTTALDVTVQAEVLGLLRGLQAEHGMAILLISHDWGVVAAMCHRAYVMY
AGHFVESGEVAELFDRPRHPYTAGLLGAVTRRTRPGERLATIPGMVPEPAAWPRGCHFAP
RCRLATPECSAAPVPMLEPSAGHHTRCVHHTKLGGRGSA
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgtcgttccggagcaggtgctcgacaccgccgccgtgccgggccgggccggtgcg
ccgaagctgtggcggaccgtgctgcggcggccgatcgccgccgtgtccgccggttatctg
ctcgcgctcgtgctcgcttcggtgctggcgcccgtgctggccccgtacggaccggcggcc
accgatctggaccaggtgctggccggcccgaccacggcccacccgctgggcaccgacagc
ctcggccgggacgtgctcacccggctgatgtacggcggccaggtcagcctgctcaacgcc
gcggtcgtggtgctcaccgtgctcctggtcggggtgagcaccggggtggccgcgggttac
ctcgacggctggctcgaccgggtggccacctgggtgctggacatgatgctggcgatcccg
gtgatcgtgacgctgctggccgtgctcgcggccgtcgacggcaggcagctcatcggcatg
gtcgcgctcggcgtgctggtctcccccggcctggccagggtggtccggggggccacgctc
gccgtgcgggaggagctgtacatcgccgcggccagggtgagcgggctgccgaaccggcac
atcgtcgtcaagcacgtgctgccgagggtgtcggggccgatcatcgtgcagatctcgctg
ctcgccggtggcgcgctgctcatcgacgcgggcctgagctatctcgggttcggcgcgcag
ccgccgacggccacctggggaaacaccatcgccgaggccgccgccgtgatcgaccggcag
ccgtggctgctcatcccgcccggcgtcgcgctcggactggccattctcgcgttcggcctg
ctcggcgacaccgtgcgcgacgcgaccgcggcccggagcgggcgcaccccggcgcgggtc
cggccgccccgcgaggtccggccgccgtggcccggtcccgcaccccgatccttgctgtcc
attcaggacgtttcgatcacgcttgccccggacacggtcgtcgccgaacggctggacctg
cggatcgacgcgggggaaacggtcggcctgatcggggaatccggctgcggcaagtcgatc
accgcacgcgccgtgctgggcctgctccccgtcggcgcgcgggtcagcgccgggaacatc
ttcttcgacggcaccgaattgacccggctcggccagcgcgagacgcgccggttgcgcggg
tcgaggatcgcgctggtctcccaggaacccgtctccggtctcgacccggtgtacaccgcg
ggcaggcagctcggtgagctggtgcggcgccaccacggcggttcccgccgcgcggtacgg
acgcattcgctcgacctgctgcggtcggtggacttcccggacccgcgagcggtggccgac
cgctatccccacgagctctccggcgggatggcgcagcgagtcgcgatcgccatggcgctc
gccggggcgccggacctgctcatcgccgacgagccgaccaccgcactggacgtcaccgtg
caggccgaggtgctcggcctgctccgcggcctccaggccgagcacggcatggcgatcctg
ctgatcagccacgactggggcgtggtggccgcgatgtgccaccgcgcgtacgtcatgtac
gccgggcacttcgtcgagtcgggtgaggtggccgaactgttcgaccggccgcgacacccc
tacaccgcgggcctgctcggtgcggtgacccgccgaacccggccgggagagcggctggcc
acgattcccggcatggtgcccgagcccgcggcctggccgcggggctgccacttcgccccg
cgctgccggctcgccacgcccgagtgctcggcagcgcccgtcccgatgctcgaaccgagc
gccgggcaccacaccaggtgcgtccaccacacgaagctcggcggaagaggctcagcatga
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