Arvicanthis niloticus (African grass rat): 117713073
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Entry
117713073 CDS
T08817
Symbol
Col17a1
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
117713073 (Col17a1)
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Motif
Pfam:
Collagen
DUF2868
Motif
Other DBs
NCBI-GeneID:
117713073
NCBI-ProteinID:
XP_034365286
EnsemblRapid:
ENSANLG00005005158
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Position
1:complement(154034061..154080924)
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AA seq
1469 aa
AA seq
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MDVTKKSKRDGAEVTERIVTETVTTRLTSLPPKGSTSNGYAKTGSLGGGSRLEKQSLTHG
SSGYINSSGSIRGNASTSSYRRAHSPASTLPNSPGSTFERKTHMTRHGTYEGSSSGNSSP
EYPRKELASSSTRGRSQTRESEIRVRLQSASPSTRWTELDEVKRLLKGSRSASASPTRNT
SNTLPIPKKGTVETKTVTASSHSVSGTYDSTILDDNFPPHMWSSTLPAGSSMGTYHNNIT
TQSTSLLNTNAYSAGSVFGVPNNMASCSPTLHPGLSSCSSVFGMQNNLAPSSSGVSHGTA
TTSTAYSVKKNVPQPPTVTSTGVSTSATCTTGVQSDDLLHKDCKFLILEKDNVPAKKEME
LLIMTKDSGKVFTASPASISSTSFSEDTLKKEKQAAYAADTCLKADVNGDLNTVSTKSKA
TSAENHSYDHRGGGSGRGKGGGAGGGGASAAGGGGGAWGAAPAWCPCGSCCSWWKWLLGL
LLTWLLLLGLLFGLIALAEEVRKLKARVEELENTSVLYHDVKTDRSSRDRLQAEAPSLGP
GLGKAMDSYGQEAIWLFVRNKLMTEQENGNLRGNPGPKGDMGSQGPKGDRGLPGTPGIPG
PLGHPGPIGPKGQKGSIGDPGMEGPIGQRGVAGPIGPRGEPGPPGSGEKGDRGIAGEQGP
RGLPGVPGSAGLRGPSGPPGPQGPPGSVGPQGLRGEVGLPGVKGDKGLMGPPGPKGDQGE
KGPRGLTGEPGIRGLPGAVGEPGARGPVGPAGPDGQQGSRGEQGLTGMPGTRGPPGPAGD
PGKPGLTGPQGPQGLPGSPGRPGTKGEPGAPGRVMTSEGSATITVPGPPGPPGAMGPPGP
PGTPGPAGPAGLPGQQGPRGEPGLAGDSLLSSGSSISEVLSAQGVDLRGPPGPPGPRGPP
GPSIPGPPGPRGPPGEGVPGPPGPPGSFLTDSETFYTGPPGPPGPPGPKGDQGDPGVPGT
PGISGGLSHGASSSTTYMQGPPGPPGPPGPPGSLSSSGQDIQRYIAEYMQNDNIRTYLSG
VQGPPGPPGPPGPIITITGETFDYSQLASQVVSYLRSSGYGVGLSSASSSEDILAMLRRN
DVWQYLRQHLVGPPGPPGPPGVSGDGSLLSLDYGELSRHILNYMSSSGISFGHPGPPGPP
GLPGTSYEELLTMLRGSDYRDIIGPPGPPGPPGIPGSAWSSISVEDLSSYLHTAGLSSIP
GPPGPPGPPGPRGPPGVSAALSAYAAENSDNFRSELISYLTSPDVRSFIVGPPGPPGPQG
PPGDGHLRENYNWGSSSSARRGTSYSSSMGIGGTNGGSIGEGGAYGAGDGGPYGTDIGPG
GGYGAAAGGGIYGPNGESVRAGFTGDLDYNTLALRVSESMQRQGLLQGMAYTVQGPPGPQ
GPPGISRVFSAYSNVTQDLMDFFRTYGTIPGPPGQKGDVGTPGPKGDRGPAGPRGPPGPP
GPRGNKGEKGDKGDQIYSGRRKRSIAAKP
NT seq
4410 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgaccaagaaaagcaagcgagacggtgctgaagtcactgagagaattgtcacg
gaaacagtaacaacaagactcacatccttaccaccaaaagggagcaccagcaatggatat
gctaagactggctctctgggtggaggaagtcggctagagaagcaaagcctgacgcatggc
agcagcggctacatcaactcaagcggaagcatccgaggcaatgcttccacctccagttac
cggagagctcactctccggcctctaccctgcccaactctcctggttctaccttcgaaagg
aaaactcacatgactcgccatggaacttatgaagggagctccagtggcaactcgtcccct
gagtatccacgaaaggaactcgcctcttcttcaaccagaggacgaagccaaacacgagag
agtgaaatccgagttcggctgcagagtgcatcgccatccaccagatggacagagctggat
gaggtgaaacgtttgcttaaggggagccgatccgcaagtgcaagtcccaccaggaacact
tccaacacactccccatccccaagaaaggcacggtggagaccaaaacggtgacagcgagt
tcccactcagtgtcaggaacctatgactcgacaatcctggacgacaactttcccccgcac
atgtggtcctccaccttgcctgcagggtcctccatggggacctatcacaacaacataaca
acccagagcacatccctcctcaacaccaacgcctactcagcaggatcagtctttggagtg
ccaaataacatggcgtcctgctctcccacactgcaccccggactcagcagctgctcctca
gtgtttggcatgcagaacaacctggcccccagctcttctggcgtctcccatggcacagcc
accacttccacagcatacagtgtaaagaaaaatgtgccccagccacccactgtcaccagc
accggcgtgtccacctctgccacctgcaccaccggtgtccagagtgacgacctcctacat
aaagactgcaagttcctgattctggagaaagacaacgtaccagctaagaaggagatggag
ctcttgatcatgaccaaggacagtgggaaggtcttcaccgcctctcccgccagcatctct
tcaacttctttttcagaagacaccctgaaaaaagagaagcaggctgcatatgccgcagac
acgtgcctcaaggcggatgtgaatggagacctaaataccgtgtccacaaagagcaaggcc
acctcagcagaaaaccatagctatgaccaccgaggtggcggcagcggcagaggcaaaggc
ggaggtgctggtggtggcggcgctagtgccgccggtggtggcggaggagcttggggggct
gcacctgcctggtgcccctgcggctcctgctgcagctggtggaagtggttactgggcctg
ctgctcacctggctgctgttgctgggcctgctcttcggcctcattgcactggcggaggag
gtaaggaagctgaaggcccgcgtggaggagctggaaaacaccagcgtgctgtatcatgat
gtgaagacggacagaagcagcagggaccgcctccaggctgaggcccccagcctgggacct
ggattaggcaaggctatggacagctacggtcaggaggcgatctggctgtttgtaaggaac
aagctgatgacagagcaggagaacggaaatctcagaggaaatcctggtccaaaaggggac
atggggagtcaaggacccaaaggggaccgaggccttcctgggaccccaggtatccctggg
cccctgggccaccctggcccgataggaccaaagggacaaaaaggcagcattggcgatcct
ggcatggaaggacccataggccagagaggggtagcaggccccataggacctcgtggtgaa
cctgggcctcctgggtctggagagaaaggagacagagggattgcaggagaacaaggtcct
cggggccttcccggtgtcccaggttctgcaggtctcagaggtcccagtggccctcctggt
ccccagggccccccaggctctgtgggtccccaagggctccgaggtgaagtgggacttcct
ggtgtcaaaggtgacaaaggactcatgggaccaccaggacccaaaggtgaccagggtgag
aaaggacccagaggcctcacaggggagcctggcattcgaggtttgcctggagctgtgggt
gaacctggagccagaggcccagtgggtcccgctggcccagatggacagcaaggttccaga
ggtgagcaaggcctgacagggatgcctggaacccggggccccccaggacccgctggagac
ccaggaaagccaggtctcacaggaccccaaggacctcagggacttcctgggagccctggc
cggccagggactaaaggtgaacctggcgctcctggaagagtcatgacttcagagggatca
gcaacaatcactgtgcccggacctcccggacctcctggtgccatgggacccccgggacct
ccagggactccaggtccagctggccctgctggtctcccaggacaacaaggcccacgaggg
gagccaggacttgctggtgactcactcctaagtagtggcagctccatctctgaggtcctc
tctgcccaaggtgttgacttacgaggtccccctggcccacctggcccacgagggccacca
gggccttccatcccaggcccgccaggacccagaggccctccaggggaaggcgtgccaggc
ccacctggcccaccaggatccttcctgactgactcagaaaccttctacacgggccctcca
ggtccacctggccccccaggtcccaaaggagaccaaggtgatcctggcgtcccaggcact
cctggcatctctggtggtctttctcatggggcatcgtcaagcactacatacatgcagggt
ccacctggccctccagggcctcctgggcctccgggctctctcagcagctctggacaggat
atccaacgctacatcgcagagtacatgcaaaatgacaacatcaggacttatctctcagga
gttcagggtcccccgggcccaccaggtcccccagggcccatcatcaccatcacaggagag
actttcgactactcccagctggcaagccaggtcgtgagctacttgcggtcatcaggctat
ggtgttggcttgtcctctgcctcctcctcagaagatatcttggccatgctgcgacggaac
gatgtgtggcagtacttacgtcagcacctggtgggtcctcctggtcctccagggccacca
ggtgtcagtggagatgggtccctcctgtctttggactatggagaactgagcagacatatt
ctcaactatatgtcaagttctgggatcagctttgggcatcctggcccaccaggaccccct
ggcctgccaggaacatcctatgaggagctactgaccatgctccgagggtctgactacaga
gacatcattggacctccagggcccccaggaccgcccgggataccaggcagtgcatggtcc
agcatcagtgtggaggacctctcctcatacttgcacactgcagggctgtcctccatccca
ggccctccaggcccaccaggcccgccaggccctcgagggcccccaggtgtctcagcagct
ctgtccgcctacgcagctgaaaacagcgacaatttccgcagcgagctaattagctacctc
acaagtcctgatgtccgcagcttcatcgttggccctccaggccctccggggccacaggga
ccacctggagacggtcacttacgggagaactacaactggggcagcagctcctcagccaga
agggggacttcctacagctcttccatgggcatagggggaaccaatggaggctccataggc
gaaggtggagcctatggtgcaggagatgggggcccctacggtactgacatcggcccaggc
ggaggctatggggcagctgcaggtggtggtatatatggccccaatggtgaatcggtccgg
gctggcttcactggagacttagattacaacacgctggcattgcgggtgtcggagagcatg
cagcgtcagggtttgctacaagggatggcctacactgtccagggcccaccagggccccaa
ggcccgcctggcatcagcagggtcttctctgcctacagcaacgtgacacaagacctcatg
gacttcttccgaacatatggtactatcccaggaccacctgggcagaagggagatgtggga
accccaggacccaaaggtgacaggggccctgctggaccacgaggtcctcctgggccacct
ggcccccgagggaacaaaggagagaaaggagacaaaggtgaccagatctacagtgggagg
aggaagagaagtatcgctgccaagccataa
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