Arvicanthis niloticus (African grass rat): 117718733
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Entry
117718733 CDS
T08817
Symbol
Cacna1i
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1I
KO
K04856
voltage-dependent calcium channel T type alpha-1I
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04010
MAPK signaling pathway
anu04020
Calcium signaling pathway
anu04713
Circadian entrainment
anu04925
Aldosterone synthesis and secretion
anu04927
Cortisol synthesis and secretion
anu04929
GnRH secretion
anu04934
Cushing syndrome
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117718733 (Cacna1i)
04020 Calcium signaling pathway
117718733 (Cacna1i)
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
117718733 (Cacna1i)
04925 Aldosterone synthesis and secretion
117718733 (Cacna1i)
04927 Cortisol synthesis and secretion
117718733 (Cacna1i)
09159 Environmental adaptation
04713 Circadian entrainment
117718733 (Cacna1i)
09160 Human Diseases
09167 Endocrine and metabolic disease
04934 Cushing syndrome
117718733 (Cacna1i)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
anu04040
]
117718733 (Cacna1i)
Ion channels [BR:
anu04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
117718733 (Cacna1i)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
117718733
NCBI-ProteinID:
XP_034372457
EnsemblRapid:
ENSANLG00005013086
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All DBs
Position
13:55335778..55432507
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AA seq
2196 aa
AA seq
DB search
MADSNLPPSSAAGPDPEPGITEQPGPRSPPPSPPGLEEPLDGTNPEVPHPDLAPVAFFCL
RQTTSPRNWCIKMVCNPWFECVSMLVILLNCVTLGMYQPCDDMECLSDRCKILQVFDDFI
FIFFAMEMVLKMVALGIFGKKCYLGDTWNRLDFFIVMAGMVEYSLDLQNINLSAIRTVRV
LRPLKAINRVPSMRILVNLLLDTLPMLGNVLLLCFFVFFIFGIIGVQLWAGLLRNRCFLE
ENFTIQGDVALPPYYQPEEDDEMPFICSLSGDNGIMGCHEIPPLKEQGRECCLSKDDVYD
FGAGRQDLNASGLCVNWNRYYNVCRTGNANPHKGAINFDNIGYAWIVIFQVITLEGWVEI
MYYVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQREHRLMLEQRQRYLSS
STVASYAEPGDCYEEIFQYVCHILRKAKRRALGLYQALQNRRQATGPGTPAPAKPGPHAK
EPSHCKLCPRHSPLDPTPHTLVQPISAILASDSSSCPHCQHEAGRRPSGLGSADSGQEGS
GSGGSAEAEANGDGPQSSEDGVSSGLGKEEEQEDGAARLCGDVWRETRAKLRGIVDSKYF
NRGIMMAILVNTVSMGIEHHEQPEELTNILEICNVVFTSMFALEMILKLAAFGLFDYLRN
PYNIFDSIIVIISIWEIVGQADGGLSVLRTFRLLRVLKLVRFMPALRRQLVVLMKTMDNV
ATFCMLLMLFIFIFSILGMHIFGCKFSLRTDTGDTVPDRKNFDSLLWAIVTVFQILTQED
WNVVLYNGMASTTPWASLYFVALMTFGNYVLFNLLVAILVEGFQAEGDANRSYSDEDQSS
SNLEEFDKLPEGLDNSRDLKLCPIPMTPNGHLDPSLPLGGHLGPAGAMGTAPRLSLQPDP
VLVALDSRKSSVMSLGRMSYDQRSLSSSRSSYYGPWGRSGTWASRRSSWNSLKHKPPSAE
HESLLSGERGGSCVRACEGAREEVPPRAAPLHAPHTHHAHHGPHLAHRHRHHRRTLSLDT
RDSVDLAELVPVVGAHSRGAWRAAGQAPGHEDCNGRMPNIAKDVFTKMDDRRDRGEDEEE
IDYTLCFRVRKMIDVYKPDWCEVREDWSVYLFSPENKFRILCQTIIAHKLFDYVVLAFIF
LNCITIALERPQIEAGSTERIFLTVSNYIFTAIFVGEMTLKVVSLGLYFGEQAYLRSSWN
VLDGFLVFVSIIDIVVSVASAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLIS
SLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNRSDCVAANYRWVHHKY
NFDNLGQALMSLFVLASKDGWVNIMYNGLDAVAVDQQPVTNHNPWMLLYFISFLLIVSFF
VLNMFVGVVVENFHKCRQHQEAEEARRREEKRLRRLEKKRRKAQRLPYYATYCPTRLLIH
SMCTSHYLDIFITFIICLNVVTMSLEHYNQPTSLETALKYCNYMFTTVFVLEAVLKLVAF
GLRRFFKDRWNQLDLAIVLLSVMGITLEEIEINAALPINPTIIRIMRVLRIARVLKLLKM
ATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGKLVCNDENPCEGMSRHATF
ENFGMAFLTLFQVSTGDNWNGIMKDTLRDCTHDERSCLSSLQFVSPLYFVSFVLTAQFVL
INVVVAVLMKHLDDSNKEAQEDAEMDAEIELEMAHGLGPGPGPCPCPCPCPCPGPRMPTS
SPGAPGRGSGGAGVGGGDTESHLCRHCYSPAQETLWLDSVSLIIKDSLEGELTIIDNLSG
SIFHHYSSPAGCGKCHHDKQEVQLAETEAFSLNSDRSSSILLGDDLSLEDPTACPQGRKE
SKGELEPPEAMQAGDLDECFYPFATEPVSAGPESLLCEMGAIPFNPVQSWLKHESSQAPP
SPFSPDGSSPLLQMPAEFFHPAVSASQKGQEPGMSAGTLPKIALQGSWASLRSPSVNCTL
LRQATVSDTSLDASPSSSAGSLQTTLEDSLTLSDSPRRALGPPLQVPGPRASLSPATRRR
LSLRGRGLFSLRGLRAHQRSHSSGGSTSPGCTHHDSMDPSDEEGRGGAGGGGAGSEHSET
LSSLSLTSLFCLPPTLPPPGLTPARKFSSTSSLAAGPGRPGTTVSARGLARSPSWAADRS
KDPPGQAQLASGLGSSAPEPQPPPGESTDAASKRKR
NT seq
6591 nt
NT seq
+upstream
nt +downstream
nt
atggctgacagcaacttaccaccctcatctgcagcaggcccggaccctgaaccgggaatc
actgagcagccggggccccggagtcctcctccatcccctccaggcctggaggagccattg
gatggaaccaaccctgaggtcccgcatccagacctggcacctgttgccttcttctgcctg
cgccagaccacaagcccacggaactggtgcatcaagatggtatgtaacccatggttcgag
tgtgtgagcatgctggtcatcctgctgaactgtgtgaccctgggcatgtaccagccatgt
gacgacatggagtgcctgtcagaccgttgcaagatcctgcaggtctttgatgacttcatc
ttcatcttcttcgccatggagatggtgcttaagatggtggccctgggcatttttggcaag
aagtgctacctcggagacacatggaaccgcctggatttcttcattgtcatggcagggatg
gtcgagtactctctggacctacagaacatcaacctgtcagccatccgcactgtgcgagtc
ctgaggcctctcaaagccatcaaccgtgttcccagcatgcggatcctggtgaacctgctg
ctcgacacgctgcccatgctgggaaatgtgctcctgctctgtttcttcgtcttcttcatc
ttcggcatcatcggtgtgcagctctgggcaggcctgctgcggaaccgctgcttcctggag
gagaacttcaccatacaaggggatgtggccctgcccccttattaccaaccagaagaggat
gacgagatgccctttatctgctccctgtcgggggacaatggcatcatgggctgccacgag
atccccccactcaaggaacagggtcgagaatgctgcctgtccaaagatgatgtgtacgac
tttggggcgggacgccaagacctcaacgccagcggcctctgcgtcaactggaaccgctac
tacaacgtctgccgcacgggcaatgccaaccctcacaaaggcgccatcaactttgacaac
attggctatgcctggattgtgatcttccaggtgatcactctggaaggctgggtggagatc
atgtactatgtgatggatgcacattcgttctacaactttatctacttcattctgctcatc
atagtgggctccttcttcatgatcaacctgtgcctcgttgtcatagcgacccagttctca
gagaccaagcaacgggaacaccggctgatgctggagcaacgccagcgctacctgtcctcc
agcacggtagccagttacgctgagccgggtgactgctatgaggagatcttccaatatgtc
tgtcacatccttcgcaaggccaagcgccgcgctctgggcctctaccaggccctgcagaac
cggcgccaggccacgggcccggggacaccagcccctgccaagcctgggccccatgccaag
gagcccagccactgcaagctgtgcccacgacacagtcccctggaccccactccccacaca
ctggtgcagcccatctccgctattctggcctctgactccagcagctgccctcactgccag
catgaggcaggcaggcggccctccggcctgggcagcgctgactcaggccaggaaggctcg
ggttctggcggctctgcagaggcagaagccaatggggatggaccccagagcagtgaggat
ggggtctcctcgggcttggggaaggaggaggaacaggaggatggggcagcccgactgtgt
ggggatgtgtggcgagagacacgagccaagctgcggggcatcgtggacagcaagtacttc
aacagaggcatcatgatggctatcctagtcaacacggtcagcatgggcatcgagcaccat
gaacagcccgaggagctgaccaacatcctagagatctgtaatgtggtcttcaccagcatg
tttgccctggagatgatcctgaagctggctgccttcgggctctttgactacctgcgaaac
ccttacaacatcttcgacagcatcattgtcatcatcagcatctgggaaatcgtggggcag
gctgacggcggcctgtccgtgctgcgcaccttccggctgctgcgggtgctgaagctggtg
cgcttcatgccggcgctgcggcgccagctcgtggtgctcatgaagaccatggacaacgtg
gccaccttctgcatgctgctcatgctcttcatcttcatcttcagcatccttgggatgcat
atctttggctgcaaattcagcctccgcacggacactggagacacagtccctgacaggaag
aacttcgattccttgctgtgggccattgtcacagtgttccagatcctcactcaggaggac
tggaatgttgtcctgtacaatggcatggcttccaccaccccctgggcctccctctatttt
gttgccctcatgacctttggcaactatgttctcttcaatctcctggtggctatcctggta
gagggcttccaggctgagggtgatgctaatcgctcctactctgacgaggaccagagctca
tccaacttggaggagtttgacaagctcccagagggcctggacaacagcagagatctcaag
ctctgcccgatacccatgacacccaatggacacctggaccctagcctccctctgggtggg
catctgggtcctgctggtgccatgggtactgccccccgcctctcactgcagccagacccg
gtactggtggccctagactcccggaaaagcagtgtcatgtcactgggcaggatgagctat
gatcagcgatccttgtccagctcccggagctcctactacgggccctggggccgcagcggg
acctgggccagccgtcgctccagctggaacagcctgaaacacaagccaccctcagctgag
catgagtccctgctctccggggagcgtggtggtagctgcgtcagggcctgtgaaggcgcc
cgggaggaggtgccacctcgcgctgcacccctgcatgccccacatacccaccacgcgcac
catggaccccacctggcccaccgtcaccgccaccaccgccggactctgtccctcgatacc
agggactctgttgacctggcagagttggtgcccgtggtgggtgcccactcgcggggcgct
tggagggcagcaggccaggcccctggtcacgaggactgcaatggcagaatgcccaacata
gccaaggatgtcttcaccaagatggacgaccgccgcgaccgtggggaggacgaggaggag
atcgactacaccctgtgtttccgcgtccgcaagatgattgatgtgtacaagccggactgg
tgcgaagtccgtgaggactggtcggtctacctcttctcccctgagaacaagttccggatc
ctgtgtcagaccatcattgctcacaagctttttgactacgtggtcttggccttcatcttc
ctcaactgtatcaccattgctctggagaggccccagattgaagctggtagcactgagcgc
atcttcctcacggtgtctaactacatcttcacagccatcttcgtgggcgagatgacactg
aaggtggtttctctgggtctgtacttcggtgagcaggcatacttgcgtagcagctggaat
gttctggatggtttcctggtctttgtgtccatcatcgatatcgtagtatccgtggcctct
gcggggggagccaagattctgggagtcctccgggtcctgaggctcctgcgtaccttacgt
cctttgagggtcatcagccgggcccctgggctgaagcttgtggtagagacgcttatctcc
tccctcaagcccatcgggaacatcgtcctcatctgctgtgccttcttcatcatcttcggc
atcctgggggtgcagcttttcaaaggcaagttctatcactgtctgggagtggatacccga
aacataaccaacagatctgactgcgtggccgccaactaccgctgggtgcatcacaaatac
aactttgataacctgggccaggctttgatgtccctctttgtcttggcctccaaggatggc
tgggttaacatcatgtacaatgggttggatgctgttgctgtggaccagcagccggtgacg
aaccacaacccctggatgctgctgtacttcatctctttcctgctcatcgtcagcttcttc
gtgctcaacatgttcgtgggtgtggtcgtggagaacttccacaagtgccggcagcaccag
gaggctgaggaggcacgacggcgtgaggagaaacggctacggcgcctggaaaagaagcgc
cgtaaggctcagaggcttccctactatgccacctactgtcccacaaggctgctcatccac
tccatgtgcactagccactacctggacatcttcatcaccttcatcatctgcctcaacgtg
gtcaccatgtccctggagcactacaaccagcctacatctctagagacagccctcaagtac
tgcaactacatgttcaccactgtctttgtgctggaggctgtgctgaagctggtagcattt
ggcctgaggcgtttcttcaaggaccgatggaaccagctggacctggccattgtgctgcta
tccgtcatgggcattacactggaggagatcgagatcaatgctgccctgcccatcaatcct
accatcatccgtatcatgcgcgttctacgtatagcccgggtgttgaagctgttgaagatg
gccacaggaatgcgggccctgctggacacggtggtacaggctctgcctcaggtgggcaac
ctgggcctcctcttcatgctgctcttcttcatctacgctgctctgggagtggagctcttc
ggaaagctggtctgcaacgacgagaacccgtgtgagggcatgagccggcatgctaccttc
gagaacttcggcatggccttcctcacgctcttccaggtctccacaggcgataactggaat
ggaattatgaaggacactctgcgagactgcacccatgacgagcgcagctgcctgagcagc
ctgcagtttgtatcgcctctgtatttcgtgagctttgtgctcactgcccagttcgtgctc
atcaacgtggtggtggccgtgctgatgaaacatctggatgacagcaacaaggaggcccag
gaggatgcagagatggatgctgagatcgagctggagatggcccatggcctaggccccggc
cctggcccctgcccctgtccctgcccctgcccctgtcctggcccgaggatgcccactagt
tcaccgggggctccgggccgaggatcaggaggggcgggtgttggaggaggagacacggag
agccacctgtgccggcactgctattctccagcccaggagaccctgtggctggacagcgtc
tctttaatcatcaaggactccttggagggggaactgaccatcattgacaacctgtctggc
tccatctttcatcactactcctcacctgccggctgtggcaagtgtcaccatgacaagcaa
gaggtgcagctggctgagacagaggccttctccctgaactcagacaggtcctcgtccatc
ctgctgggggatgacctgagtcttgaggaccccacggcctgcccgcagggccgcaaggag
agcaagggtgagctggagcctccggaggccatgcaggctggagacctggatgaatgcttt
tacccttttgccactgagccagtgtctgcaggcccagagagcctgctgtgcgagatgggg
gccattccgttcaaccctgtccagtcctggctcaaacatgagagcagccaagcacctccg
agccccttctccccagatggctccagccctctgctgcagatgcctgctgagttcttccat
cctgctgtgtctgccagccagaaggggcaggaaccaggcatgagtgcggggaccctgccc
aagattgcacttcaggggtcctgggcatctctgaggtcaccaagtgtcaactgcaccctc
ttgcgccaggctaccgtgagtgacacgtcattggatgccagccctagcagctcagcgggc
agcctgcagaccacactggaggacagtctgaccctgagtgacagtccccggcgtgccctg
gggccaccgctccaggtgccagggccacgggctagcctgtcaccagccacccggcgccgc
ctcagcctgcgggggcgtggcctgtttagtctgcgtgggctgcgggcccatcagcgcagc
cacagcagcggtggctccaccagccctggctgcactcaccacgactccatggacccctct
gatgaggagggccgcgggggcgcaggtggcgggggtgcaggcagtgagcactctgagacc
ctcagcagcctgtcgctcacatctctcttctgcctaccacccacgctgccaccacccggc
ctcaccccagccaggaagttcagcagtaccagcagcctggccgctggacctggccgtcct
ggcactactgtctcggcacgcggcctggccaggagcccctcatgggctgcagaccgcagc
aaggacccaccaggccaggctcagctggcctcaggcttgggctcctcagcacccgagcca
cagccacctcccggagagtcaactgatgctgcgagcaaaaggaagagatga
DBGET
integrated database retrieval system
