Arvicanthis niloticus (African grass rat): 117723474
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Entry
117723474 CDS
T08817
Symbol
Shank1
Name
(RefSeq) SH3 and multiple ankyrin repeat domains protein 1
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04724
Glutamatergic synapse
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09150 Organismal Systems
09156 Nervous system
04724 Glutamatergic synapse
117723474 (Shank1)
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
SAM_1
SH3_2
Ank_5
SAM_2
PDZ_6
PDZ
SH3_1
SH3_9
FERM_f0
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
117723474
NCBI-ProteinID:
XP_034378978
EnsemblRapid:
ENSANLG00005002641
LinkDB
All DBs
Position
1:18004639..18053171
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AA seq
2158 aa
AA seq
DB search
MTHSPATSEDEERHSASECPEGGSESDSSPDGPGRGPQGTRGRGSGAPGNLASTRGLQGR
SMSVPDDAHFSMMVFRIGIPDLHQTKCLRFNPDATIWTAKQQVLCALSESLQDVLNYGLF
QPATSGRDANFLEEERLLREYPQSFEKGVPYLEFRYKTRVYKQTNLDEKQLAKLHTKTGL
KKFLEYVQLGTSDKVARLLDKGLDPNYHDSDSGETPLTLAAQTEGSVEVIRTLCLGGAHI
DFRARDGMTALHKAACARHCLALTALLDLGGSPNYKDRRGLTPLFHTAMVGGDPRCCELL
LYNRAQLGIADENGWQEIHQACQRGHSQHLEHLLFYGAEPGAQNASGNTALHICALYNKE
TCARILLYRGANKDVKNNNGQTPFQVAVIAGNFELGELIRNHREQDVVPFQESPKYAARR
RGPPGAGLTVPPALLRANSDTSMALPDWMVFSAPGASSSGTPGPTSGPQGQSQPSAPSTK
LSSGTLRSASSPRGARARSPSRGRHPEDAKRQPRGRPSSSGTPRDGPAGGTGGSGGPGGS
LGSRGRRRKLYSAVPGRSFMAVKSYQAQGEGEISLSKGEKIKVLSIGEGGFWEGQVKGRV
GWFPSDCLEEVANRSQEGRQESRSDKAKRLFRHYTVGSYDSFDAPSDYIIKEKTVLLQKK
DSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQN
VVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMDEAVHKKASQQAKRLPPPAISLRSKSM
TSELEEMVSPWKKKIEYEQQPAAVPSMEKKRTVYQMALNKLDEILAAAQQTISASESPGP
GGLASLGKHRPKGFFATESSFDPHHRSQPSYDRPSFLPPGPGLMLRQKSIGAAEDDRPYL
APPAMKFSRSLSVPGSEDIPPPPTTSPPEPPYSTPPAPSSSGRLTPSPRGGPFNPSSGGP
LPASSPSSFDGPSPPDTRGGGREKSLYHSGALPPAHHHPPHHHHHHAPPPQSHHHHAHPP
HPPEMETGGSPDDPPPRLALGPQPSLRGWRGGGPSPTSGAPSPSHHSSSGGSSGPTQAPA
LRYFQLPPRAASAAMYVPARSGRGRKGPLVKQTKVEGEPQKGSLPPASSPTSPALPRSEP
PPAGPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPTQPDGAGGGGSSPSPAPATS
PVPPSPSPVPTPASPSGPATLDFTSQFGAALVGAARREGGWQNEARRRSTLFLSTDAGDE
DGGDSGLGPGAPPGPRLRHSKSIDEGMFSAEPYLRLESGGSSGGYGAYAAGSRAYGGSGS
SSAFTSFLPPRPLVHPLTGKALDPASPLGLALAARERALKESSEGGGTPQPPPRPPSPRY
DAPPPTLHHHSPHSPHSPHARHEPVLRLWGDPARRELGYRAGLGSQEKALTASPPAARRS
LLHRLPPTAPGVGPLLLQLGPEPPTPHPGVSKAWRTAAPEEPERLPLHVRFLENCQARPP
PAGTRGSSTEDGPGVPPPSPRRVLPTSPTSPRGNEENGLPLLVLPPPAPSVDVDDGEFLF
AEPLPPPLEFSNSFEKPESPLTPGPPHPLPDPPSPATPLPAAPTPAVAAAPPTLDSTASS
LTSYDSEVATLTQGAPAAPGDPPAPGPPAPAAPAPPAPQPGPDPPPGTDSGIEEVDSRSS
SDHPLETISSASTLSSLSAEGGGNTGGVAGGGAGVASGTELLDTYVAYLDGQAFGGSGTP
GPPYPPQLMTPSKLRGRALGTSGNLRPGPSGGLRDPVTPTSPTVSVTGAGTDGLLALSAC
SGPSTAGVAGGPVAVEPEVPPVPLPTASSLPRKLLPWEEGPGPPPPPLPGPLSQPQASAL
ATVKASIISELSSKLQQFGGSSTAGGALPWARGGSGGSTDSHHGGASYIPERTSSLQRQR
LSEDSQTSLLSKPSSSIFQNWPKPPLPPLPTGSGVSSSTAAAPGATSPSASPASASTRHL
QGVEFEMRPPLLRRAPSPSLLPASDHKVSPAPRPSSLPILPSGPLYPGLFDIRSSPTGGA
GGSADPFAPVFVPPHPGISGGLGGALSGASRSLSPTRLLSLPPDKPFGAKPLGFWTKFDV
ADWLEWLGLSEHRAQFLDHEIDGSHLPALTKEDYVDLGVTRVGHRMNIDRALKFFLER
NT seq
6477 nt
NT seq
+upstream
nt +downstream
nt
atgacccacagccccgcgacaagcgaggacgaggaacgccacagtgccagcgagtgtccc
gaggggggctcagaatcggacagctccccagacggtccaggaagaggcccccaggggact
cggggccggggcagcggagcacctggtaacctggcctctacccgaggcctccagggacgc
tccatgtctgtccctgacgacgcccacttcagcatgatggttttcaggattggcatccct
gacttgcaccagacgaaatgcctacgcttcaacccagatgccaccatctggacggccaaa
cagcaagtactctgtgccctgagcgagagcctacaggatgtacttaactacggactgttc
cagccagccacctcaggccgggatgccaacttcctggaggaggagagacttctaagagag
taccctcagtcctttgagaaaggggtaccctacctggagttccgctacaagacccgagtc
tacaaacaaaccaacctggatgagaaacagctggccaaactgcacacaaagacggggttg
aagaagttcctagaatacgtgcagctcgggacgtctgacaaggtggcgaggctgctggac
aaggggctggaccccaattaccatgactcagattcaggagagacacctttgacactggcg
gcccagactgaaggctcagtagaggtgattcggacactgtgcctgggcggggcgcacata
gacttcagggcccgggatggcatgacagcactccataaggctgcatgtgctcggcactgc
ctggcactcacggcacttctggatcttgggggctcccccaactacaaggaccgacgaggg
ctgacccccctgttccacacagctatggtggggggagacccccgctgctgcgagctactt
ctgtacaacagagcccagctgggcattgcggatgagaacggctggcaggaaatccaccag
gcctgccaacgagggcactctcagcacctggagcacctgctcttctatggggctgagcct
ggagcccagaatgcctcaggaaacacggccctgcacatctgtgctctctacaacaaggag
acctgtgccagaatccttctttatcgcggagcaaacaaggatgtgaaaaataacaatgga
cagacacccttccaggtggctgtgattgctgggaattttgaactgggggaactgattcgt
aaccatcgggaacaggatgtggtacccttccaggagtcccccaagtatgcagcccggcgt
cggggacccccaggcgcagggctgactgtacccccggcgctgctgcgggcaaacagcgac
acaagcatggcgctgcctgattggatggtgttttcggccccgggggcttcatcctctggg
acccctggccctacctcaggaccccagggccagtcacagccctcggcccccagcaccaag
ctcagtagtgggaccctcagaagtgccagcagcccccgtggtgcccgggcacgctcccca
tcccgggggagacatcctgaagatgccaagagacaacctcgaggccggcccagctccagc
gggacaccccgagatgggccggctgggggaactgggggctcagggggccctgggggctcc
ctgggcagcagaggcagacgtaggaagctctattcagcggtacccggacgctccttcatg
gcggtgaagtcctaccaggcgcaaggcgagggggagatctctctgagtaaaggcgaaaag
atcaaagtgctcagcatcggggaaggaggcttctgggaaggccaggtcaaaggtcgagtt
ggctggttcccttctgactgcctagaagaggtggcaaaccgttcccaggagggaagacaa
gaaagccgaagtgacaaggcaaagagactcttcaggcattacacagtgggctcttacgac
agcttcgatgccccaagtgattacatcatcaaggagaagacagtcttactgcagaagaag
gacagtgaggggttcgggttcgtgctccggggggccaaggcgcagacccccatcgaggaa
ttcacccccaccccggccttcccggcgctgcagtacctcgagtctgtggacgagggtggc
gtggcatggcgggctggactacgaatgggagacttcctcatcgaggtgaacggacagaat
gtagtgaaggttggccaccgtcaggtggtcaacatgatccgacagggaggcaacacactg
atggtcaaggtggtgatggtgaccagacacccagacatggacgaggctgtccacaagaaa
gcatcccagcaggctaagcggctcccgcccccagccatctccctgcgttccaagtctatg
acctcagagctggaggaaatggtctccccctggaagaagaaaattgaatacgagcaacag
cctgcagcagtgcccagcatggagaaaaagcggactgtgtatcagatggcactcaacaaa
ctggatgagatcttggccgctgctcagcagaccatcagcgcaagtgagagtcctgggccc
ggtggcctggcatccctgggcaagcaccgacccaaaggattctttgccactgagtcgagc
tttgatcctcaccaccgctcccagccaagttatgaccggccctctttcctgcctcctgga
cctggccttatgctccggcagaaatctatcggggctgcggaagacgacagaccctaccta
gcgcccccagccatgaaattcagtcgtagcctgtcagtcccgggttcagaggacatacct
cccccacccactacatccccaccagaaccgccctatagcacacctccggccccttcctct
tccggccgtctcactccctcgcctcggggagggccctttaaccccagttccgggggtccc
cttcccgcctcctccccttcatctttcgatgggccatcccctcctgacacccgtggtggg
ggccgagagaagagcctgtatcacagtggagccctaccccctgcccaccaccacccacct
catcaccaccatcatcacgccccacctccccagtcccaccatcatcatgcacatcctcct
cacccaccggagatggagacaggaggttcccccgacgatcccccacctcgattggccctg
ggaccccagcccagccttcgaggctggcgaggtggaggacccagcccgacctcaggggcc
ccatcaccttcccaccacagtagcagcggaggcagcagtggtcctactcaggctcccgcc
ctgcgctacttccagctgcccccgagggcggccagtgcggctatgtatgtgccagcccgc
tccggccgaggtcgcaagggcccgctggtcaagcagaccaaagtggaaggtgagccccaa
aagggcagcctccctcccgcgtcgtctccaacatccccggcgctgcctcggtccgaacca
cctccggccgggccgtcggagaaaaattccatccctatacctaccatcatcatcaaagcc
ccatctaccagtagcagcggccgcagcagtcagggaagcagcacagaggctgagcccccc
acccagccggacggcgcgggcggcggcggatcctcgcctagccctgcacctgccacgtcc
cccgtgccgccgtccccgtcgcccgtgcccacccccgcgtcacccagcggcccggccacc
ctggatttcactagccagtttggagcagccctagtgggcgcggcgcggagggagggaggc
tggcagaacgaagcccggcggcggtccacgctgttcctgtccaccgacgcaggagatgag
gatggaggcgacagcgggctgggcccgggggcgcccccgggtccccggctgcgccattcc
aaatctattgacgaaggcatgttctccgccgagccgtacctccggctggagtcggggggc
agcagcgggggctacggggcctacgcagcgggcagccgagcctatgggggcagcggtagc
agcagcgccttcaccagcttccttcccccgcggcccctggtgcatccactaaccggcaaa
gccttggatcccgcctctccgctggggctggcgttggccgcccgggagcgggccttgaag
gagtcctcggagggtgggggcacccctcagccgcctccgagacctccgtcaccacgctat
gacgccccaccgcccacccttcaccaccactcgccccattcaccccattcgccacatgcg
cgtcacgagccagtgttgcgcctctggggggaccccgcgcgccgggagctggggtaccgg
gcaggcctagggagtcaggagaaagcccttaccgctagtccacctgcagctcgccgctcc
ctactgcaccgtctgcccccgacggctcccggggtcgggcccctcctgctgcagctgggg
ccggagcccccaactccccatcctggggtgagcaaggcctggcgcacagcagccccggag
gagcccgagcggctgccgctgcacgtgcgattccttgagaattgccaggcccggcctccc
ccagctggtacgagagggtcctccactgaagatgggcctggggtcccgcctcccagccct
cgcagagtcttaccaacctctcccacctccccgcgaggcaacgaggagaacggccttccg
ctactggtcctgccaccgccagccccttcggtggatgtggacgacggcgagttcttgttt
gcggagccgctgcctccacccctggagttttccaatagcttcgaaaagccagagtcgcct
ctcacacccggtcctccccacccgctgcctgaccctccctccccggctacccctctaccc
gcagccccaactccggctgtggccgcagcccctcccaccttggactccacagcatccagc
ctgacctcctacgacagcgaagtggccacgctgacccagggggctcccgcggctcctggg
gatcctcctgctccaggcccgcctgccccggcagccccagctcccccagcaccgcagcca
ggccctgaccctccacctggaacagattctggaattgaggaggtggacagtcgcagcagc
agcgatcacccgctggagaccatcagcagcgcatctacactcagcagcttgtcagccgaa
ggaggaggcaacacagggggcgtggctgggggcggggccggggtggccagcgggacggag
ctcctggacacctacgttgcctacctggatggccaggccttcgggggcagtgggactcct
ggcccaccatatcccccccagctcatgactccttctaagctccggggcagggcgcttggg
actagtggaaatttgagacctggtcccagtgggggactccgagatcctgtcacccccacc
agccccaccgtctctgtgaccggagctggaacagatgggctactggccttgagtgcttgc
tctggaccctcgacggcaggtgtggcagggggccccgtggcggttgagccagaagtcccg
cctgtacctttgcccactgcctcatccctgccgcggaagctactaccgtgggaggagggt
ccgggaccaccaccaccacccctgccggggcccctgtcccagcctcaggcctctgccttg
gccacggtcaaagccagcatcatcagcgaactcagctccaagctccagcagtttggtggg
tcctctaccgcgggaggagctctgccttgggctcggggaggcagcgggggcagcacagac
agccaccatggaggagccagttacatcccagagaggacctcctccctgcagcggcagagg
ctctccgaagactcccagacctctctcctctccaaacccagcagcagcatctttcagaac
tggcctaaaccccctctgccaccactccctaccggatctggggtctcctcttcaacagca
gcagccccaggagctacatccccttcagcctcacctgcctcagcttccaccagacacctg
cagggtgtggaatttgagatgcggcctccgctgctccgccgggcacccagcccctcgctg
ctgcctgcctcggatcacaaggtcagcccagcgcccaggccctcttctttgcccatcctg
ccttcaggacccctctacccgggcctcttcgacatccgtagctctccgaccggaggggca
ggaggctcggctgaccccttcgctcccgtctttgtgccaccacaccccgggatatctggg
ggtcttggaggagccttgtctggggcctctcgctccctatcacccacccgcctgctctcg
ctgcccccggacaagccgttcggcgccaagcctctagggttctggaccaagtttgacgtc
gccgattggctggagtggctgggcttgtcagagcaccgagcccagttccttgaccacgag
attgatggctcccatctgcccgccttgaccaaggaggactatgtggacctaggcgtgacc
agggtgggccaccgtatgaacattgaccgggctctcaaatttttcctggagaggtga
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