Asparagus officinalis (garden asparagus): 109826065
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Entry
109826065 CDS
T05243
Name
(RefSeq) probable RNA-dependent RNA polymerase 5 isoform X1
KO
K11699
RNA-dependent RNA polymerase [EC:
2.7.7.48
]
Organism
aof
Asparagus officinalis (garden asparagus)
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aof03036
]
109826065
Enzymes [BR:
aof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.48 RNA-directed RNA polymerase
109826065
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Gene silencing
RNA interference (RNAi) pathway
RDRC (RNA-directed RNA polymerase complex)
109826065
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RdRP
DNA_pack_C
Motif
Other DBs
NCBI-GeneID:
109826065
NCBI-ProteinID:
XP_020248613
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All DBs
Position
1:74290139..74343719
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AA seq
1051 aa
AA seq
DB search
MFSLPHSVERMLERVQLEKSTEPADYGARRDLARIGEDQALEILGRISQAPAIKKSLSAF
ISYMVKKYCNEPRTPERRRPEPAYSQESVNFSAPSTVDFGGSRASTSGELSPNIASPRHT
AIHVPPRVPPNPVPISISVPPSTPPPRDPPNPVPTAIHVPPITLPLGGPPNPMLITKHPE
QLHDGVMQALGELEFRKAFLILSYAGRKKVNDIVSVDLIMKLKSLSMANFEQQLWEIVKN
KGCIPASDRRKNLNWDCQKTYIYHCHIDSDGSILFKGPYLEDTSTHFHRVLGDDNVLMVK
FSSGNDYSNHKFLYHRIAEEGIIMGLRRYRFFVFKDGGKEKSKDPASSSVKCYFVRTESK
WVLDVNKPYILTNKSIQEARNIFMHVHTLPSVEKYMARFSLILSKTINLKLDFASVTVEQ
IEDIPCIDEDGRNVFDEDGNLMIHTDGTGFISEDLAYKCPRRIWKGRSITPREFQTFLDG
LEATETLERHSGVGQSLDIEPPLLMQVRLFYDGTVVKGTLLVNKQLPLRTIQIRPSMLKV
NRDPNFMLASHCNSLEVVGTSNLSKKSRLSKSIIMLLHYGGVPQEYFLELTRKAILDAKD
AKLSRKSALGVASLHGNMDDFLVARMIACGIPLHEPYLEHQLSVMTRAEWNGLKAAKIPV
NDCYYLMGTADPTGTLEPNEVCIILENGQVSGKVLVFKHPGLHFGDVHIVNAVYVKNMEK
IVGNAKYAIFFPTKGQRSLADEMANSDYDGDLYWVSRNAQLIEHFKQSKPWSWTCSKPKE
SRPRRPIDFSSNDLERALFQKFLDSTFEQSYAMSEASDSWMAYMDRVLTECVPDMEKQRL
HAKLLKLIDMYYLALDAPKKGSTVEVPKDLKADKFPHYLERSNKPSYHSISVLGSIYDMV
SSFQLQEAPIDVVEPLPCFSEQAPQHCLDLWSTLYHEYRKDMQAALGEKDAKLKNLAAEQ
VTLKYKQMLYGAEEFEKSTRNREDIFAEAIAIYQVVYNHVNRMEKKEVGRCGFVWKIAGH
ALFELHARKQSEDSPIVIQKSVLKEILRVNC
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgttttctcttcctcattccgtcgagcgaatgctcgaaagggtccagcttgagaaatcg
acggagcctgcagattacggcgctcgacgggatctggcgaggatcggggaggatcaagct
cttgagatcctcgggagaatctctcaagccccagcgattaagaaaagcctctctgcgttc
atcagttacatggtgaaaaagtactgcaatgagccgcgaacccccgagaggaggaggccg
gagcctgcttactctcaggagagtgttaatttttctgcgccgtcgaccgtcgattttggg
ggaagtagagcttcaaccagtggtgaattgtcgccgaacattgcctctccgaggcataca
gccattcatgttcctccaagggttccacccaatcccgtgcctatctccattagtgttcct
cccagtaccccgcctccaagggacccacccaatcccgtgcctacagcgattcatgttcct
cccattaccctgcctctggggggcccacccaatcccatgctcattactaagcatccagaa
caactgcatgacggagtcatgcaagcattaggagagctcgagtttaggaaagctttcttg
attttgagctatgccgggagaaagaaggtgaatgacatagtctccgtagatctgattatg
aagcttaagtcgctgtccatggctaattttgagcaacaactctgggaaattgtcaaaaat
aaaggctgcatcccagcttcagatagaagaaagaatctcaattgggattgccaaaagacg
tacatctaccattgccatattgattctgatgggagtatcctttttaagggtccttatctt
gaagacacaagcactcacttccatcgggtgcttggtgatgataatgtgttgatggtgaag
ttctcttctggaaacgattattccaatcataagtttctttaccataggattgctgaggaa
ggcataatcatgggtctacgtcgttatcggttttttgtcttcaaggatggggggaaggag
aagagcaaggatccagcttcctcgtcggtgaagtgctattttgttcgtacggaatccaag
tgggttctggatgtgaacaagccatatattctgactaataaatctatacaggaagcacgc
aacattttcatgcatgtacatacacttccgagcgtggagaagtacatggccaggttttca
ctaatcttatcgaagactatcaacttgaaactggactttgcatctgttactgttgagcaa
attgaagacataccttgcatagatgaagatggtcgtaatgtattcgatgaagatggcaat
ttgatgatccatactgatgggactgggtttatttcagaggacttagcgtacaaatgtcct
cgaagaatctggaaaggacgttccataacccccagggagttccagacatttttggatggg
cttgaagctacagaaactctggagagacattcaggcgtaggacagtccctagatatcgaa
ccgcctctacttatgcaggttcgcttgttttatgatggcactgttgtgaaaggaactctc
ctagtaaataaacagctccctctacgaacgattcaaataagaccttctatgctcaaggtt
aatagagatcctaatttcatgttggcttcgcattgcaactcattagaagttgttggaacc
agcaatttgtccaagaagtcacgcttgtctaaatcgataattatgctgcttcattatgga
ggagtcccccaagagtattttcttgaactaactaggaaggcgatcctggatgcaaaagat
gcgaaattgtcaagaaaatctgcacttggagttgcatctttgcatggaaacatggatgac
tttctcgtagcgagaatgattgcctgtggaataccactccatgagccgtacctggagcat
cagttatcagtgatgactcgggcagaatggaatggccttaaggcagcaaaaattcctgtg
aacgattgttattatttgatgggtacggctgaccctacagggacgctagaacctaatgaa
gtttgtatcatactagaaaatggacaagtgtctggaaaagtgctagtcttcaagcaccca
ggtttgcacttcggagatgtacacattgtaaatgctgtgtatgtcaagaatatggaaaag
atcgtggggaacgcaaagtacgccattttcttccctacaaaagggcaaaggtccttggct
gatgagatggcaaatagtgattatgacggagatctttactgggtttctagaaacgcacag
ttgattgagcacttcaaacagagcaaaccatggagttggacatgttccaagccaaaagag
tcgcggccaaggaggccaattgacttttctagcaatgacttggaaagagcactgttccaa
aaatttctagacagtacatttgaacaaagttatgcgatgagtgaagcttcagattcgtgg
atggcctacatggatcgggtattgaccgaatgtgtacctgatatggaaaagcaacgatta
catgcaaagcttcttaaactaattgatatgtactaccttgctctggatgctccgaagaag
ggttcaacggtcgaagtaccaaaggatcttaaggcagacaagttcccacattacttagaa
aggtcaaataaaccatcttatcactccatatccgtattgggctctatatatgacatggtg
tcttcatttcaacttcaagaggcccccatagatgtagtagagccacttccttgcttcagt
gagcaggctcctcaacattgcttggatttgtggagcacactataccatgagtataggaaa
gatatgcaagcggctctcggagaaaaggacgcaaaattgaaaaatttagcagcagagcaa
gttactttgaagtataaacagatgttatatggagccgaggagtttgaaaagagcacaagg
aaccgagaagatatttttgcggaggccatagctatctatcaagtagtttataatcatgtc
aaccgtatggagaaaaaggaagttggtcgttgtggatttgtatggaaaattgctggtcat
gctctgtttgagctacatgcaaggaaacaatctgaagattcccccattgtaatccagaag
tcggttttgaaggaaatcctacgtgtaaattgttaa
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