KEGG   Asparagus officinalis (garden asparagus): 109832678
Entry
109832678         CDS       T05243                                 
Name
(RefSeq) LOW QUALITY PROTEIN: probable splicing factor 3A subunit 1
  KO
K12825  splicing factor 3A subunit 1
Organism
aof  Asparagus officinalis (garden asparagus)
Pathway
aof03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109832678
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:aof03041]
    109832678
Spliceosome [BR:aof03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    109832678
 Complex B
    109832678
 Complex C
   U2 SnRNP specific factors
    109832678
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin DUF2849
Other DBs
NCBI-GeneID: 109832678
NCBI-ProteinID: XP_020255669
LinkDB
Position
3:3531563..3535787
AA seq 792 aa
MVAAILPLPAPPEDGNLGELPLAQVPSSDEKTEKPPKPEPPAPVATHTRTIGIIHPPPDI
RVIIEKTATFVAKNGPEFERRIMAHNAGNAKFNFLNPSDPYHAYYQHRVSEFKTQLQSSA
QLPDSLQEQQPPSDPGDAMRVDSSEAPAVTDEKSKTDPASQFLVQPKKVLEPPEAEQYTV
RLPEGITGEEVDIIKLTAQFVARNGKNFLQALTAREGNNPQFYFLKPTHSMFTFFTTLAD
AYSKVLMPPQGLTDKLRNGVQDMTVVLERCLHRLEWERSQEQARLKAEDEIEQERMQMAM
IDWHDFVVVETIEFADEEDEELPVPMSLEEVIRRSKVSALEEEEGMEVVGTAKEVEMEMD
EEEIQMVEEGMRAARIEENGGGDEKKGDVKMTLNDEPEPPMRIVKNWKRPEERILAERDP
TKFVISPITGELIPISEMAEHMRISLIDPKYKEQKERMMAKIRETTLAADDEISRNIVGL
ARTRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHTGSIGRTANQALSQNLSGDEQ
SDLSNNLPGPAAPPLRPGVPSVRPLPPPPGLALNIPRYPPNAVPYSTAQPPRPGIIQMIP
SVRPPHPPSMMMPRPPISVNPPTMPVPPPPGSQFTPLQRPYGSMPMPPPPNMPMMPPPPX
AQGMPPPPPPDEAPPSLPDEPEPKRQKVDDMLIPEDQFLAQHPGAARISVSVPNVDEGNL
KGQTLEITVQSLSETIGSLKEKIAGEVQLPANKQKLSGRAGFLKDNLSLAYYNIVPGETL
TLALRERGGRKR
NT seq 2379 nt   +upstreamnt  +downstreamnt
atggtggctgcgatcctccctctcccggccccacctgaagatggaaacctcggcgagcta
cctctggctcaagttccttcgtccgacgagaaaaccgagaaacctccgaagcctgagccc
ccggctccggtggcgactcacacgagaaccatcggaattatccacccgccgccggatatt
cgagtgatcattgagaagactgcgactttcgtcgcgaagaacggccctgagttcgagcgg
aggattatggctcataacgcgggcaatgccaagttcaatttcctgaacccgtcagatcct
tatcatgcttattaccagcacagagtttcggagttcaaaacccagttgcagtcctcggcc
cagctgcccgactctttgcaggagcagcagccgccatcggatcccggcgatgctatgaga
gttgattcatcggaagccccagcagtcacagatgagaaatcgaaaactgacccggcttct
caatttcttgtgcaacccaagaaagttttggagccccctgaggctgagcagtacacagtt
aggctccccgaggggattactggggaagaagtggatataattaagcttacagctcagttt
gtcgcgagaaacgggaagaattttttgcaagccttgactgcgagagaaggaaacaacccg
cagttttattttttgaagccgacacatagcatgtttactttttttacgacattggctgat
gcgtactcgaaggttttgatgccgcctcagggtttgacagacaagttgaggaatggtgtg
caagatatgactgtggttcttgagaggtgtttgcataggttggagtgggaacggtcgcag
gagcaggcgaggctgaaagcagaggatgagattgagcaggagaggatgcagatggcgatg
attgattggcatgatttcgtggtggtggaaactattgagtttgcagatgaggaggatgag
gagttgccagttcctatgtcgttggaggaggttattaggaggagcaaggtgtcagctttg
gaggaagaggagggaatggaggtggtggggactgcgaaggaggttgagatggagatggat
gaggaggagattcagatggtagaggaaggaatgagggctgcaagaattgaggagaatggt
ggcggagatgagaagaagggtgatgttaagatgactctgaatgatgaacccgagcctccg
atgaggattgtgaagaactggaagaggcctgaggagaggatactagctgagagagaccca
accaagtttgtgatatcgccaataactggtgagttgataccaattagcgagatggctgag
cacatgaggatttccctgattgatcccaaatacaaggagcagaaggagaggatgatggca
aagattagagagacaactcttgctgctgacgacgagatctctaggaacattgttgggctt
gctcgaaccaggcctgatatatttgggacaactgaagaagaggtttcaaatgcggtcaag
gctgagattgagaaaaagaaggacgaacaaccaaagcaagtcatatgggatgggcacact
ggtagcattggccgtactgcaaatcaagcattgtctcagaatctttcaggggatgaacaa
tctgaccttagtaataatcttccgggacctgctgctcccccgctgagacccggagttcct
tcagttcgtcccctccctccaccacccgggttggcgctcaacatacctagatatccacca
aatgccgtcccatactctactgctcaaccgccaaggcccggtattattcaaatgattcct
tcagtgaggccgccacatccaccatcgatgatgatgcctcgaccaccaatctcggtgaac
ccaccaactatgccggtgcctcctccgccgggttctcagttcactcctttgcaaagacct
tatggttcaatgcccatgccacctccgcctaacatgcctatgatgccgccaccgccanat
gcacaaggaatgccgccacctccgcctcctgatgaggctccaccttcgctgcctgatgaa
cctgagccaaaaaggcagaaagttgatgatatgcttatcccggaggatcagttccttgct
caacatccgggagctgctcggatttcagtatctgttcctaatgttgatgaaggaaacttg
aaaggtcaaactctggagatcacagtccaatccttatctgaaactattggaagtcttaaa
gagaagattgctggtgaggtccagcttcctgccaataaacaaaagctcagtggccgtgca
ggttttctcaaggataatctgtcacttgcttattacaacattgtcccgggtgaaacactg
actcttgccttgagggagcgtggtggaagaaagagatga

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