Asparagus officinalis (garden asparagus): 109836730
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Entry
109836730 CDS
T05243
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109836730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aof03021
]
109836730
03019 Messenger RNA biogenesis [BR:
aof03019
]
109836730
Transcription machinery [BR:
aof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109836730
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109836730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
CFIA_Pcf11
Motif
Other DBs
NCBI-GeneID:
109836730
NCBI-ProteinID:
XP_020260299
LinkDB
All DBs
Position
4:complement(15627990..15634981)
Genome browser
AA seq
1063 aa
AA seq
DB search
MEMESSRRSSIDRSRELPGLKKPRLADGVASRVSSSIQPTNPRIRANEREREERDDSVRV
SSSSSSLSSSYQQQQELVAQYKTALSELTINSKPIITNLTIIAGENLHAAKGIAATICNN
VLEVPSDQKLPSLYLLDSIYIKYFAARLPEVFCKAYKQVDSSIHPGMRHLFGTWRGVFPP
APLQTIEKELGFPPAVNGSSGTTASKSESQTQRPGHSIHVNPKYLEARQRLQQTRSKEIN
SDEVDVVAAVEDAERSDKAATTANIRQWRDLPTKMPNIQRTQRELTNDPIYEKKGLRDVK
DRPFSSVLPRQPATEVGRISEKNKEQDELDKSYNTSETVISRRNGFDVNNYRGSTFAQAE
RQLPSVHLNNTNKSIQAVSKNWKNSEEEEYMWDDMDPKLTDHGGNSRSIKGGLDIGKADT
RASLQRHQWAQLKNEQPDYHRDKLDVFPGIKRCGVEERVPSFRNIDDNHLQPHSQLYADS
RRHLETSADMLSVPRATSGHHSTSVWPPPDPFSGGLNQLSSRISSQEEGGSISLSSGTSP
NLISPLPRSGLLSHSHPSSLGPSPNLTSGIVGHQPLKPPSPSAHPPPPFQPLQHQKLHNA
IDHEHPRPPFPQMSQKPMQLPVNLNRAPHVPITQDFSPSLQRHQSQSPQLSSTPFTQSRY
HPPLMHQSQPEFSQQQAQTHSQPSIRSEKSTTLSNLADGSGQSSTSSLLAAIMKTGLLSN
SSPTGLQNFNIQPPLPSGPPPIQALTPSGPLVTSSSLSLQSSQANTPSLTASLPGVVLPP
LPPGPPPSSSVVPQKSSTVSAVSNPLSSLLSSLVEKGLISSPATEMPTVSSSQLSNKVQD
QRIEFSSSTSMQVPSTSAKEASVVELSAPTGVAPLAIYDTEIEELVGIDFKPEIIRELHP
QVINSLFDELKHQCDTCGLRFKLQEQLHTHSDLHSSEKSEPSSSGELSRKWYLDTSNWVT
GKIELPQIPVPSTSLVDERCEPMVPADESQYICALCGEPFEDFYSHERDEWMYKGTVYLN
SSEREDEIRKDDGIKDHAPIVHAKCLLSAADVAADATMDWADG
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atggagatggagagctctcgtagatcttcgatcgacagatctcgagaattgcccggtctc
aagaaacctaggctcgctgacggcgtcgcttctagggtttcgagctcgatccagccgacg
aatccgagaattagggcaaacgagagggagagagaggagagagatgattcagttagggtt
tcttcttcttcttcttcattgtcttcttcttatcagcagcaacaggagttagttgctcaa
tataagacggcgctttctgaattgaccatcaattcgaagcctattattactaatctaaca
ataatagctggagagaatctccacgctgcaaaggggatcgcggccacaatctgcaataat
gtgcttgaggttcccagtgaccaaaagctgccatctctttatcttcttgacagtatttat
attaagtactttgctgcaaggttgcctgaggtattctgcaaggcgtacaaacaagttgat
tcttcaatacatcctggaatgagacatctttttggtacatggagaggagtttttcctcct
gctccccttcagacaattgagaaagaacttggcttcccacctgccgtcaatggctcatct
ggaaccactgcgtcaaagtcagaatctcaaactcaacgtccagggcacagcattcatgtg
aatcctaaatatttagaggcaaggcagcgccttcagcaaacaagatctaaagaaataaac
agtgatgaggttgacgtggttgccgctgttgaagatgcagagagatcagataaagcagct
acaactgcaaacataagacaatggagggatctgcctaccaagatgcctaatattcaacgg
actcaaagggaactgacaaatgatcccatctatgagaagaaaggactgagggacgtcaaa
gaccgaccattttcttctgtacttccacgacaaccagctacggaagttggaagaatcagt
gagaagaacaaagagcaagatgagcttgacaaatcatataatacttctgagactgtaatc
agcagaaggaacggttttgatgttaataattatcgaggatctacatttgctcaagctgaa
cgtcagctaccttctgtacaccttaataatacgaataaaagcattcaagcagtatctaaa
aactggaagaattctgaggaggaagagtacatgtgggatgatatggatcccaaattgaca
gatcatggaggaaatagcaggtcaataaaaggtggtttggatatcggtaaggcagataca
cgtgctagcctgcaaaggcaccagtgggctcaactcaagaatgagcagccagattaccat
cgggacaaacttgacgtttttccaggaataaagcgctgcggagtagaagaaagagttcct
tcatttagaaatattgatgataaccatctgcaacctcacagtcaattgtatgctgactca
agaagacatttggagacctctgcagatatgctatctgtaccacgagctacatcagggcat
cattcaacgtcagtttggcccccgcccgaccctttttctggtggcctaaatcagctgagt
tcaagaatttcaagtcaagaagagggtggttccatatctcttagctctggtacatctccc
aatttaatttcacctttacctaggtctggacttctatcccattctcacccttcaagccta
ggcccttctccaaatttgacaagtggaatagttggccatcaacctttgaagcctccatca
ccttctgctcatccacctccaccttttcagcccctacagcatcagaaattacacaatgca
attgaccatgaacatcctcggcctccatttccccaaatgagtcagaaacctatgcagctt
ccagtaaatcttaatagagctccacatgtaccgatcacccaagatttttctcctagttta
cagcgacatcaatcacaatcccctcaactttcatcaaccccatttacacagtctaggtac
catcctccccttatgcaccaatcacaacccgagttctcacaacaacaggcccaaacacac
tctcagccatcaattcgttccgagaaatccacaacattatccaatttagctgatggctca
gggcaatcaagcactagtagtttactggctgctatcatgaagactggactcctttcaaac
agttctcccactggattgcaaaacttcaatatacagcctcctctaccaagcgggccccca
cctattcaagctttgacaccatctggtccgttggttacttcttcatcgttgtcacttcaa
tcttcccaagctaatactccatctcttacagcatcacttccaggtgttgtgttgcctccg
ctgccaccaggccctccaccttcttcttctgttgtaccccaaaaatccagcactgttagt
gctgtttcaaatccactttcaagccttcttagctcattagtcgagaagggtttaatatct
tctccagcaacggaaatgcctactgtatcttcgtctcaattatcaaataaagttcaagat
cagagaattgagttttctagtagtacctccatgcaagttccatcaacttcagcaaaagag
gcttctgtagtggagttatctgctcctactggcgttgccccattagcaatttatgataca
gaaattgaagaacttgtaggcattgacttcaagccagaaataattcgtgaactccatccc
caggtaattaatagtctgtttgatgagttaaagcatcagtgtgatacgtgtggcctaaga
ttcaagcttcaagaacagcttcacactcattcagatttacattcctcagaaaagtctgaa
ccgagcagttctggtgaattatctcggaaatggtatttagatacaagtaattgggttact
ggaaaaattgaattgccacagataccagtgcccagtacttctttggtagatgaaagatgt
gaaccaatggtgcctgcagatgaaagtcagtacatatgtgcactgtgtggagaaccattt
gaagacttctattcccatgagagagatgagtggatgtacaaaggaacagtgtatttgaat
tcctcagaaagagaagatgaaataagaaaagatgatgggatcaaagatcatgctcctatt
gtgcatgccaagtgtctattgagtgcagcagatgtggctgctgatgccacaatggattgg
gcagatggctaa
DBGET
integrated database retrieval system
