Asparagus officinalis (garden asparagus): 109844014
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Entry
109844014 CDS
T05243
Name
(RefSeq) flowering time control protein FY
KO
K15542
polyadenylation factor subunit 2
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109844014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109844014
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109844014
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
NBCH_WD40
eIF2A
WDR54
Motif
Other DBs
NCBI-GeneID:
109844014
NCBI-ProteinID:
XP_020268609
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All DBs
Position
5:1488409..1516441
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AA seq
699 aa
AA seq
DB search
IAAEYPQHHPHPPPHPPPFDAYGDNYGAKRMRKLVQRRAVDYTSTAVRYMQVRMWQRDVR
DRTVLQPTSAAVLDMLPPVAYADNPSTSFAAKFVHASTNKNKCSINRVLWTPTGRRLITG
SQSGEFTLWNGQSFNFEMILQAHEQPVRSMIWSHNENWMVTGDDGGSIKYWQNNMNNVKA
NKSAHKESVRDLSFSRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKTVDWHPTK
SLLVSGGKDNLALDAKSAGKQLCSFHGHKNMVLSVKWNQNGNWVLTASKDQIIKLYDIRS
MKELESFRGHRKDVTALAWHPFHEEYFVSGSYDGSIFHWLVGQETPQVEIPGAHESSVWD
LAWHPVGYLLCSGSNDHTTKFWCRNRPGDTARDRYSGGYNQGYGDQNLLSGRMMSGFPVP
EPPPTPGPFAPGLSRNEGNIPGIGVAMPLSAQSLDGSDQGEQRPAIPGLLPPGAPPLPPG
PHPSLLASGQQQAYQQYQPQQHQQQQQPSSFPQQVVQLPLPPSNMNQMQPPPHLQLLPHP
HMPRPPPGQPPQVQQLGMPGSVPSSIPGSMPMSMQNPMAMQGSSNQMISPMPQGHVMGLN
QMHSGPPSSSNLPPNVAGFPNNLTNIQGAPGAGGVQTFPMGGMFNRPPQGGQMSQIPGLN
TFQPGMMDGRGPGMGLGGANMGLPQPPPPPLPQGSAPQQ
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
attgcagccgaatacccgcagcatcaccctcatcctccgcctcatcctccaccttttgat
gcatatggagacaattatggtgctaaaagaatgcgaaagcttgtccagcgacgagctgtt
gactataccagtactgctgtccgatatatgcaggttcgcatgtggcagcgtgatgtaaga
gacaggactgttttgcaacctacttcagctgcagtcttagatatgttacctccagttgca
tatgctgacaatccatcgacaagctttgctgcaaaatttgtccatgcttccacgaataaa
aataaatgttcaatcaatcgtgtgttgtggacaccgacggggaggcgtttgattactggg
tctcagagtggtgaatttactctttggaatggccagtcctttaattttgagatgattctc
caggcacatgagcaaccagttaggtccatgatatggagtcataatgagaattggatggtc
actggtgatgatggtggttcaataaagtattggcaaaacaatatgaacaatgtgaaggca
aacaagtctgctcacaaagaatctgttcgtgacttgagtttctcaagaacagatttgaaa
ttttgttcttgctctgatgacactactgttaaagtttgggactttgcaaggtgtcaagag
gaaagatcgttaactggccatggttgggatgtcaagactgttgactggcacccgacaaag
tcattactggtttcaggtggaaaggacaatcttgctctggatgcaaaatcagccggaaag
cagctatgttcattccacgggcataaaaacatggttctttctgtcaaatggaatcaaaat
ggtaattgggttcttactgcttcgaaggatcaaattataaagctgtacgacatcagatcg
atgaaagagcttgagtcatttcgtggacaccgaaaggatgtaactgctttggcttggcat
ccatttcatgaagaatactttgtcagcgggagttatgatggatcgatctttcattggctt
gtcgggcaggaaaccccacaggttgaaattcctggtgcacatgaaagtagcgtctgggat
cttgcttggcatccggttggttatttactttgcagtggtagcaatgatcacactaccaag
ttttggtgcagaaacagacctggagatacagctcgtgacagatacagtggtggttacaat
caaggttatggagaccagaatcttctctctggtcgtatgatgagtggattcccagtacca
gaacctccaccaactccaggaccttttgctcctggattgtctcgaaatgagggaaatatt
cctggaattggagttgccatgccattatctgcccaatcgctggatggttctgatcaggga
gaacagaggccagctattccgggtcttctacctcctggagcacctcctcttccacctgga
cctcatccgtctcttctggcatctggacagcagcaagcttatcagcaataccaacctcag
caacatcaacagcagcagcaaccatcttcatttccgcaacaagtggtccaacttcctcta
ccaccatcaaatatgaaccagatgcagcctccaccacatttacagcttcttccacatcct
catatgccgcgccctcctcctggtcaaccacctcaagttcagcaacttggcatgcctggt
tccgtgccttcctcaatacctggatccatgcccatgtctatgcaaaatccaatggcaatg
cagggttcatcaaatcaaatgatatctccaatgccacaaggacatgtgatgggtcttaat
cagatgcattcaggccctccttcctctagtaaccttccacctaatgttgcggggtttcca
aataacttgacaaatattcagggtgcaccgggtgcaggtggtgtacaaacttttcctatg
ggcggcatgtttaatcggccgcctcaaggtgggcaaatgtcacagattccaggattaaac
accttccaacctggaatgatggatgggcgaggtcctgggatgggactcggaggtgcaaat
atggggcttccacaaccgcctccaccgccgctaccgcaaggttcagcaccacaacaatga
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