Asparagus officinalis (garden asparagus): 109844316
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Entry
109844316 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109844316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109844316
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109844316
mRNA degradation factors
5'-3' decay
Decapping complex
109844316
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
109844316
NCBI-ProteinID:
XP_020268893
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All DBs
Position
6:complement(704044..713137)
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AA seq
749 aa
AA seq
DB search
MGEIDGVSRVSESPNIASGNAVFDASQYEFFGKDVLEEVELGGLEDDGDDTGLVENGDKE
YPFFAIKEEKEEGEGIGLLSEVDDLSRTFSKLNRTVSEPQGIRNVHGRGSFSREGSLNVE
VKQEPDFSNWADQRMQNAENDHDSKKWSSQPYPFPPESKPLYRTSSYPQQPHTLNSHILI
YSKTLSLSLFPFPDHPLSLPTLHRLDLLFPFLLQTYPISLPHIILPGLPHGLHLMGGNMP
QFGPPAHHINARQPSPNHWPSQDGLIQGMHNSNGLMHPRLHQVQPSPPHFSNLQSQMYGP
HPPMLGMPELREQRLRPPLQMQRGRQNPRLPHQGYDDSGWPRFRSKYMSAEEIDSIVRIQ
HAATHSNDPYVEDYYHQACLAKKSSNSNSRTRHHFCPASIRDHPSHTKTNLEPHAYLKVD
ALGRLPFSSIRRPRPLLEVDPPSNSSDEILSQKSATRPLDQEPMLAARITIEDGICLLLD
VDDIDRLLQFGLLQDGGIQLRQRRQGLLEGLAASLQLVDPLGPGIAPNDDLVFLRIVSLP
KGRKLLSRFFTLLYPGDDLARIVSMAVFRHLRFLFGEMPLDTTAVKTTTDLMLTVASIVR
RMELGSLSACLAAIVCSSEQPPLRPIGSSAGDGASVVVKSVLDRATELLTDQNAAPNYSI
RNLWQESFNAFFGLLMKYCISKYEGIMESLVLGAPNAAASTIGPEVARAISQEMPMELLR
ASLPHTDENQKKLLLEFAQRSMPVTGPTS
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgggggagatagacggcgtgtctagggtttcagaaagccctaatattgcgtcgggtaat
gctgtatttgatgcgtcacaatatgaatttttcggtaaggatgtcctagaggaggttgaa
ttagggggattagaagatgatggtgatgataccgggttggttgagaatggcgataaggaa
tatccattttttgcaattaaagaagaaaaagaagagggtgaaggtattgggctattatca
gaagttgatgatctttcaagaactttctcaaagttaaacagaactgtcagtgagccacaa
ggcatcaggaatgttcatggtagaggatcattttccagagagggttctctgaatgtagag
gtgaagcaggaaccagacttctcaaattgggctgatcaacgcatgcaaaatgctgaaaat
gaccatgacagcaagaaatggtcatcccagccgtacccttttccacctgagtcaaagcca
ttgtacagaacttcctcataccctcaacagcctcataccctcaacagccacatcctcatt
tacagcaaaacattgtcactgagcctgttcccattcccagatcatcctctttcacttcct
accctccacaggctggacctcctattcccttttcttctccaaacctatcccatttctctc
ccccacatcattttgcctggactacctcatggtctccacttaatgggtggaaatatgcct
caatttggccctccagcccatcacataaatgcccgtcaaccaagtccaaatcactggcca
agccaagatgggctaattcaaggaatgcataactctaatgggttaatgcatcctagattg
catcaagttcagccttctccacctcatttctcaaatctgcagtctcagatgtatggtcct
caccctccgatgctcgggatgccagaattgagagagcagaggctcagaccaccactgcaa
atgcaaaggggaagacagaacccaagattgccacaccagggttatgatgattctggatgg
ccacgatttcgttcaaagtatatgtcagcagaggagatcgatagtatcgtaagaatccag
catgctgcaactcacagcaacgacccttatgttgaagactactatcatcaagcctgtttg
gcaaagaaatcgtccaactcgaactcaaggacgcggcaccatttttgccctgcttccatt
agggaccatccctctcacactaagaccaatttagaacctcatgcttatcttaaagtcgat
gcccttggtcgtcttcccttctcttccattcgccgacctcgccctcttcttgaagttgat
cctccttccaattctagcgatgaaattctaagccagaaatctgctaccaggcctttggat
caagagccgatgttggcagcgaggatcaccattgaggatggcatctgccttcttcttgac
gtcgatgatattgaccgcttattacagtttggtctgctgcaagatggtgggatccagttg
aggcagaggaggcagggactcttagaggggttagctgcatcacttcagctagttgatcct
cttggtcctggtattgcaccaaatgatgatcttgtgtttctgcgcattgtttctcttcca
aaaggacggaagcttctctctcgtttttttacacttctttatcctggagatgacttggct
cgaattgtttccatggctgtatttcgccacctgaggtttttattcggtgagatgccattg
gatactactgcagtgaaaacaactacagatctcatgcttacagtggcttcaattgttcgt
agaatggagttgggctcacttagtgcttgccttgctgcgattgtttgctcatcagagcag
ccaccccttcgtccaattggaagttcagctggtgatggtgcatctgttgttgtcaaatct
gttcttgatagagccacagaacttctaactgatcaaaatgctgcacccaactatagcatt
aggaatctatggcaggaatcattcaatgctttttttggattgctcatgaagtactgtata
agtaaatatgaaggaataatggagtcgttggttttgggggcaccaaatgctgcagcatct
actattgggccagaagttgcaagggctataagccaggagatgcctatggagttattaagg
gcgagtttgcctcatacagacgagaaccagaaaaagcttttgctcgagtttgctcagaga
tcaatgccagttactggaccgactagttaa
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