Asparagus officinalis (garden asparagus): 109846663
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Entry
109846663 CDS
T05243
Name
(RefSeq) uncharacterized protein LOC109846663
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109846663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aof03000
]
109846663
03019 Messenger RNA biogenesis [BR:
aof03019
]
109846663
04121 Ubiquitin system [BR:
aof04121
]
109846663
Enzymes [BR:
aof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109846663
Transcription factors [BR:
aof03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
109846663
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109846663
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109846663
Ubiquitin system [BR:
aof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109846663
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-UDP
Rtf2
Motif
Other DBs
NCBI-GeneID:
109846663
NCBI-ProteinID:
XP_020271498
LinkDB
All DBs
Position
7:complement(9242393..9257289)
Genome browser
AA seq
1090 aa
AA seq
DB search
MTTMSDDGDRTCPLCAEEMDLTDQQLKPCRCGYEICVWCWHHIMEMAEKEGAEGRCPACR
TTYDKQRIVGMAANCKRMVAEISSEKKQKPQKPKSKSSSTVEDRKHLSSVRVVQRNLVYV
MGMPSNLSDENILERKEYFGQYGKVLKVSVSRQAGATSQQAANNNTFSVYITYAREEEAV
RCIQAVHNFVLEDKALRACFGTTKYCYTWLRNMTCNNPDCLYLHDIGSQEDSFTKDEIIS
AYTRSRVPQIPSNNLQPRAGNVLPPPVDDLYCNGAVPNKQAIKNSFNVKSSSFDTSGARS
TVLPAAASWGMRASSCRSPSSDSISSQTSLKQKIEVLDSSSSSSMVSGTKQNSAWHDNAI
TPSKVPEGKSLVHTDGRSKLLEPFRRGNGRDHLTKVSDVSSRSSLDVDHSSISAWDDDIP
VAKLPNGKQTMHVNDSFRNKEMSRRINATSVSNVGEDIILDESRHSAWDDDTVFTSNMPA
ERQIVHNNDIWPSETLEPGVTFSKTSISDVTSKALPDVAHASGVSVSCSSGQLALQHENS
DRSHTASTVNSGPVNITCSEGVGCELSSSCLDTNITIAVNGNAESLCLGLSSVNLDTPLG
IDQINQHQQHNSITDQHVDENFGNLSSRLHQHYPENGAESSTSFHVNNAPVIPDAHVHGK
LSDWKLEPQKQVLSSTINGIGDATAIDDPRHRLSEITNLSSCASYKNYSSDVSNSNQLTS
NSQSGVKLFSDGDSRILGAQVNNHSLYSNGYHEQIPSSFVKPESVCEYPSTGYTGKEVYS
SSFDNILNMEGTATVDTKEEHIVSKMLSSDFDIWDNSWSSANDFAKLLAQMNKQEGPSKQ
STSWKPQNTNQSRFSFARQGNQSNLVDIAYRDTGFAQQQVPSNQEAYGSCFGNDFPVSNF
DHLNASSSTISSDTNAGIMRSKISAPPGFSAPNRAPPPGFSSQDRYVQSFSTCSDSQLLG
SALQNQFQVHATNIVDDVEFIDPAILAVGKGRLPIGVNNTGLGSRPAFHQQLNTSESDAR
IPLLMQQSISANQDPRIPSYIGDRFSQLNDAYTSSRFSAQNSSLSQFSQIPHQQPSRTLN
GQWSGWNDIQ
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccatgagcgatgatggagataggacctgccctctctgtgctgaagagatggat
ttaactgaccagcaactaaagccatgcagatgtggatatgagatatgtgtttggtgttgg
catcatataatggaaatggctgagaaagaaggtgcagaagggcgatgtccagcatgtaga
acaacatatgacaagcaaaggattgtcggaatggctgctaactgtaaaaggatggtggct
gaaataagttcggagaaaaagcagaagccccaaaagccaaaaagtaaatcctcatcaaca
gtagaggataggaagcatcttagtagcgtacgtgtggtgcagaggaaccttgtatatgta
atgggaatgccttctaatttgtccgacgaaaatattcttgagcggaaagaatactttggt
cagtatggtaaagttttaaaggtgtcagtttcaagacaagctggcgcgacttcccaacag
gcagctaacaacaatacttttagtgtgtatataacatatgccagagaggaggaggctgtc
cgatgtattcaagctgtccataattttgtattagaagataaagctttgagagcatgcttt
ggtactacaaagtattgctacacttggttgagaaacatgacttgcaacaatccagactgt
ttatatttgcatgacataggtagccaggaggacagtttcactaaagatgagattatatca
gcatatacaaggagtcgggttccacaaattccttcaaataatttgcaaccacgtgctgga
aatgtgttgccacctccggtagatgacttgtactgtaacggagcagttcccaataaacaa
gcaataaagaattccttcaatgttaaaagctcttccttcgatacaagtggtgcaaggtct
actgttcttccggcagctgcgtcatggggaatgcgtgcttcaagttgccggtcaccctct
tcagatagcataagctctcaaacttctcttaagcagaagatagaagtccttgatagttca
tctagttcttcaatggtctcaggcacaaaacagaattctgcatggcatgacaatgcaatt
accccttcaaaggttcctgaaggaaagtctttggtgcacacagatggtagatctaagctc
ttggaacctttcagacgtggtaatgggagggatcatctaacaaaagtatcagatgtgtca
tctaggtcttccctggatgttgaccatagttctatttctgcatgggatgatgacattccg
gtggccaagttacctaatggaaagcaaacaatgcatgttaacgacagctttaggaataaa
gaaatgtctagacgcataaatgcaacatctgtttcgaacgtaggagaagatattatcttg
gatgaatctcgtcattctgcatgggatgatgacactgtttttacatctaacatgccagca
gagaggcagattgtacataataatgacatttggccctcagagactttggagcctggtgtt
acattttctaaaacatctatttcagacgtgacatcaaaggctttgcctgatgtagctcat
gcttctggagtttccgttagttgttcatctggtcagcttgccctgcaacatgaaaacagt
gacagaagtcatactgcatctactgtcaatagcggccccgtaaatatcacatgttctgaa
ggtgttggttgtgaattgagtagctcctgtcttgatactaatattactatagctgttaat
gggaatgcagaaagtttatgcttggggttgtcttcagtaaatttggatacccctcttggc
attgatcagataaaccagcatcaacagcataactcaattactgatcagcatgtagatgaa
aattttgggaatttaagttcgaggctgcatcaacattatcctgaaaatggggcagaaagc
tcaacttcttttcatgtgaataatgctcctgtaattcctgatgcgcatgtccatggaaag
ttgtctgattggaaattagaaccgcagaagcaagttttatcatctaccataaatgggatt
ggagatgcaactgcaattgatgatccgagacacagactttctgaaattaccaatttatca
tcttgtgcctcgtataaaaattactcttctgatgtttcaaattcaaatcaactaaccagc
aattctcagagtggtgttaaactgttctctgatggagattctagaattttgggggcacaa
gtaaataatcactctttatattcgaatggataccatgagcaaataccaagtagttttgtt
aaacctgagagcgtatgtgagtatcctagtactggctacactggcaaagaggtgtactca
agtagttttgataacatattaaatatggaggggactgcaactgtagataccaaagaggaa
cacattgtatcaaaaatgctctcgtcagactttgatatatgggataactcatggtcttct
gctaacgattttgctaaacttcttgcccaaatgaacaaacaggagggaccttctaaacag
tcaacctcatggaagccacaaaatactaaccagtccaggttctcatttgcgaggcaggga
aatcaatcaaaccttgtagacatcgcttatagggacacaggttttgcacagcagcaagtc
ccctcaaatcaagaggcatatggaagttgctttggaaatgatttccctgtcagtaatttt
gatcatctcaatgcgagcagctcaaccatctcttctgatactaatgcaggtatcatgagg
tctaaaatatctgccccacctggattttctgctcctaatagggctccacctccaggcttt
tcatctcaagatagatatgtccagtctttcagtacatgctcagattcacaattgcttgga
agtgcacttcaaaatcagtttcaagtacatgcgaccaacattgttgatgatgtagaattt
attgatccagcaattcttgctgttggcaaaggaaggctacctattggagtaaataataca
ggattaggttccaggcctgcttttcaccaacaactaaacacatcagagagtgatgcaaga
atcccgttgttgatgcaacaatctatttctgctaaccaggacccaagaattcctagctat
attggagatagattctcccaactcaatgatgcttatacatcttccagattttcagcacag
aattctagcttatctcaattttcacagataccacaccagcaaccctcacgcactctaaat
ggccagtggagcggttggaatgatatacag
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integrated database retrieval system
