Amycolatopsis keratiniphila: AORI_4401
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Entry
AORI_4401 CDS
T02678
Symbol
lig
Name
(GenBank) DNA ligase (ATP)
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aoi
Amycolatopsis keratiniphila
Pathway
aoi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AORI_4401 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aoi03400
]
AORI_4401 (lig)
Enzymes [BR:
aoi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AORI_4401 (lig)
DNA repair and recombination proteins [BR:
aoi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AORI_4401 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
AGM06986
UniProt:
R4T3J9
LinkDB
All DBs
Position
4816144..4817619
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AA seq
491 aa
AA seq
DB search
MRDPNRKGVRRPTMAEKLGEYRRKRRPGRTPEPLPDRDGKTGADDLFVIQEHHASSLHWD
IRLERDGVLVSWAVPKGLPMSPDQERLAVHTEDHPMEYLTFEGEIPAGEYGGGTMTIWDT
GRYETLHFNDHKVEVVFHGTRARGKYLFLNVKKDGRDNGWLLKRLDPADPGRKELPSFLA
PMLTKPGRLPSTGEDPEWAYEFDWSGRRTLIRVSGGRITAYDDSGDDVTGLYPEFRGLGE
QLGATEVFLDGEIVVFDGGKPSAEGLGHRARATKNSAKRLTSRYPAFYLVNDLLHLDGRA
CVGTPYVERRELLDELGIAGPHWQVPRYYLGDGGAVARAAREHGLAGVVAKRADSAYHPG
KRTGEWLSITGTLVQQVVLGGWRPGGGSRAGTFGSLLLGVPHEDGLRYIGNCGVGFASDE
LEDLAKQLFRLERKTSPFHSVPDKQARDARWSRPTIVGEVVFGGWTDAGCLRNPRWRGLL
PDVAADEVGLD
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
ttgcgtgacccgaaccggaaaggggtgcgccggccgaccatggcggagaaactcggcgaa
taccgccgtaagcgcagacctgggcggactcccgaacccctgccggatcgcgacgggaag
accggggccgacgatctcttcgtcatccaggaacatcacgcgagcagcctgcactgggac
atccgcctcgaacgggacggcgtcctggtctcctgggcggtgccgaagggcctgccgatg
tcaccggaccaggaacgtctggccgtgcacaccgaagaccacccgatggagtacctcacc
ttcgaaggcgagatccccgccggtgaatacggcggcggcaccatgaccatctgggacacc
ggccggtacgaaacgctgcacttcaacgaccacaaggtcgaagtcgtcttccacgggacg
cgggcacgcgggaaatacctgttcctcaacgtgaagaaggacgggcgcgacaacggctgg
ctgctcaaacggctcgaccccgccgaccccggccggaaggaactcccctccttcctcgcc
ccgatgctgaccaaaccgggccgtctgccgtcgaccggcgaagacccggaatgggcttac
gaattcgactggtccgggcgccgcaccctgatccgggtgtccgggggccggatcaccgcc
tacgacgattcaggcgacgacgtcaccgggctgtaccccgaattccgcggcctcggcgag
caactcggtgccacggaagtctttctcgacggggaaatcgtcgtcttcgacggcgggaag
ccgagcgcggaagggctcgggcaccgagcgcgggcgacgaagaactccgcgaagcggctc
acctcgcgctacccggcgttctacctggtgaacgatctcctgcacctggacggccgcgcc
tgtgtggggacgccgtacgtcgaacggcgggaactcctcgacgaactcgggatcgccgga
ccgcattggcaggtcccccggtactacctcggggacggcggcgcggtcgccagggcggct
cgcgaacacgggctggccggcgtcgtcgccaaacgggccgactccgcgtaccacccggga
aagcgtaccggggaatggctttccatcaccggaaccctggtacagcaggtggtgttggga
ggctggcggcccggtggcggcagccgtgcgggcactttcggttcgctgctgctcggcgtc
ccgcacgaagacggcttgcggtacatcggaaactgcggtgtcggcttcgcgagtgacgag
ctggaggatctcgccaagcagctgttccgcttggagcgcaagacatccccgttccactcc
gttccggacaaacaggcacgggacgcgcggtggtcgcggccgaccatcgtcggcgaggtc
gtcttcggtggctggaccgacgcgggctgcctgcgcaatccgcggtggcgtggcctgctg
ccggacgtcgccgccgacgaggtcggactcgactag
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