KEGG   Amycolatopsis orientalis: AORI_5517Help
Entry
AORI_5517         CDS       T02678                                 

Gene name
lig
Definition
(GenBank) DNA ligase (ATP)
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
aoi  Amycolatopsis orientalis
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:aoi00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    AORI_5517 (lig)
Enzymes [BR:aoi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AORI_5517 (lig)
DNA repair and recombination proteins [BR:aoi03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AORI_5517 (lig)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(6263077..6265113)
Genome map
AA seq 678 aa AA seqDB search
MAREAVRGVPGWVSPMLASPDGGRLREGPEWAYEYKLDGYRACMRIAADGTTVLTSRNDV
DFTDEFLDLTGVLTEALEGRSAVLDGEIVVYNDAGQIDFGLLQERRGRYQTHRGSARRDE
PFADDVPVRFLAFDLVQLGGVSLLREPYDERRRQLTALPMPDPYRVEVVRGFTFTDLAAD
RRTPWHLLDHVKASGHEGLVAKLRTAAYTPGRRSNAWLKHPLIQTAEVIVCGYRPGQGRL
DGLMGGLLLGAHDPDTGDLVYIGDVGTGFTEAERARLQARLDALERKRHPFAETPPRADT
ARAQWVEPELVGEVVFRQFTRGAGRLRHTAWRGLRDDKEPADVLAPQRREPASARKTTRE
QAQGDPVAEDQPTASPGAKITVQAGDRRLVLSNLDKPLYPDGFTKGEVINYYSRIAPVLL
PHLAGRPVTFIRFPDGVGGEQFFEKNVPHGAPAWLPTARIARSGSRGSTEPVTYALLDEL
AAVVWAANMAALELHVPQWTVGDDGTRRPPDRLVFDLDPGPGTSIVHCCRVAERLHEALT
DNGLTPLAKTSGSKGMQLYCAITTDDPAAPSAYAKKLAQRLARETPGKVTAVMAKAQRTG
RVFIDWSQNNPAKTTVAPYSLRGRDHPTVSTPVTWDEVRACRRPAQLVFTADDVLDRVNE
HGDLLAGLDVTRAPLPSG
NT seq 2037 nt NT seq  +upstreamnt  +downstreamnt
atggcgcgggaggcggtgcgcggtgttccggggtgggtgagcccgatgctggccagtccg
gacggtggccggttgcgggaggggccggagtgggcgtacgagtacaagctcgacggctac
cgggcgtgcatgaggatcgccgccgacggcaccacggtgttgaccagccgtaacgacgtc
gacttcaccgacgagttcctggatctgaccggtgtcctgacggaggcgctggaggggcgg
agcgcggtgctggacggggagatcgtcgtctacaacgacgcgggtcagatcgacttcggg
ttgctgcaggaacgccgcggccgctaccagacccatcgcggctctgctcgccgtgacgag
ccgttcgccgacgacgttccggtccggttcctggcgttcgatttggtgcagctcggcggt
gtctcgctgctgcgtgagccgtatgacgagcgccggcggcagttgaccgcgctgccgatg
ccggatccgtaccgggtggaggtggtgcgcgggttcaccttcaccgatctggccgcggat
cgccggaccccgtggcacctgctcgaccacgtgaaagccagtggtcacgagggattggtc
gcgaagctccgcaccgccgcctacacccccgggcgccgcagcaacgcctggctgaaacat
ccgctgatccagacggccgaggtgatcgtctgcggttaccggcccgggcagggacggctg
gacgggctgatgggcgggctcctgctcggtgcccacgacccggacaccggcgacctggtc
tacatcggtgacgtcggcaccggcttcaccgaagccgaacgagcccgcttgcaggcccgg
ctcgacgccctcgagcggaagcggcatcccttcgctgagacaccacccagggccgacacc
gcgagggcgcagtgggtggagccggagctggtgggcgaggtggtgttccggcagttcacc
cgcggcgccggtcgcctgcggcataccgcgtggcggggtctgcgcgatgacaaggagcct
gccgacgtcctggccccgcaacgacgcgagcccgcctctgcccgaaagaccacgcgtgag
caggcacaaggtgatccggtggccgaggatcagcccacggcttcaccgggggcgaagatc
accgtccaggccggtgaccggagactcgttctgtccaatttggacaaacctttgtatccg
gacgggttcacgaagggggaggtgatcaactactactcgcgtatcgccccggtgctgctg
ccgcatctggccgggcgtccggtgacgttcatccgcttcccggacggtgtcggcggggag
cagttcttcgagaagaacgtcccgcacggcgcgccggcgtggctgccgaccgcccggatc
gctcgcagcggcagccggggctcgacagagccggtcacgtacgcgttgctggacgagctc
gccgcggtggtgtgggcggcgaacatggccgcactcgaactccacgttccacaatggacc
gtcggcgacgacggcacgcgccgcccgccggaccggctggtgttcgacctcgaccccggg
ccgggaacctcgatcgtgcactgctgccgcgtcgccgaacgactgcacgaagccctgacg
gacaacgggttgacgccgctggcgaagacgtccggctcgaagggcatgcagctctactgc
gccatcaccaccgacgaccctgcggccccgtcggcgtacgcgaagaaactcgcccaacgc
ctggcccgggagacaccgggcaaggtgaccgccgtgatggccaaagcccagcgcaccggg
cgggtgttcatcgactggtcccagaacaaccccgccaagaccaccgtcgccccgtactcg
ctgcgcggccgcgaccaccccaccgtctccaccccggtcacctgggacgaagtccgcgcc
tgccgccgcccggcacagctggtgttcaccgccgacgacgtcctcgaccgcgtcaacgaa
cacggcgacctcctcgccggactcgacgtcacacgcgctccattgccctccggctga

DBGET integrated database retrieval system