Amycolatopsis keratiniphila: AORI_5517
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Entry
AORI_5517 CDS
T02678
Symbol
lig
Name
(GenBank) DNA ligase (ATP)
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aoi
Amycolatopsis keratiniphila
Pathway
aoi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AORI_5517 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aoi03400
]
AORI_5517 (lig)
Enzymes [BR:
aoi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AORI_5517 (lig)
DNA repair and recombination proteins [BR:
aoi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AORI_5517 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AGM08100
UniProt:
R4SZV3
LinkDB
All DBs
Position
complement(6263077..6265113)
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AA seq
678 aa
AA seq
DB search
MAREAVRGVPGWVSPMLASPDGGRLREGPEWAYEYKLDGYRACMRIAADGTTVLTSRNDV
DFTDEFLDLTGVLTEALEGRSAVLDGEIVVYNDAGQIDFGLLQERRGRYQTHRGSARRDE
PFADDVPVRFLAFDLVQLGGVSLLREPYDERRRQLTALPMPDPYRVEVVRGFTFTDLAAD
RRTPWHLLDHVKASGHEGLVAKLRTAAYTPGRRSNAWLKHPLIQTAEVIVCGYRPGQGRL
DGLMGGLLLGAHDPDTGDLVYIGDVGTGFTEAERARLQARLDALERKRHPFAETPPRADT
ARAQWVEPELVGEVVFRQFTRGAGRLRHTAWRGLRDDKEPADVLAPQRREPASARKTTRE
QAQGDPVAEDQPTASPGAKITVQAGDRRLVLSNLDKPLYPDGFTKGEVINYYSRIAPVLL
PHLAGRPVTFIRFPDGVGGEQFFEKNVPHGAPAWLPTARIARSGSRGSTEPVTYALLDEL
AAVVWAANMAALELHVPQWTVGDDGTRRPPDRLVFDLDPGPGTSIVHCCRVAERLHEALT
DNGLTPLAKTSGSKGMQLYCAITTDDPAAPSAYAKKLAQRLARETPGKVTAVMAKAQRTG
RVFIDWSQNNPAKTTVAPYSLRGRDHPTVSTPVTWDEVRACRRPAQLVFTADDVLDRVNE
HGDLLAGLDVTRAPLPSG
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgggaggcggtgcgcggtgttccggggtgggtgagcccgatgctggccagtccg
gacggtggccggttgcgggaggggccggagtgggcgtacgagtacaagctcgacggctac
cgggcgtgcatgaggatcgccgccgacggcaccacggtgttgaccagccgtaacgacgtc
gacttcaccgacgagttcctggatctgaccggtgtcctgacggaggcgctggaggggcgg
agcgcggtgctggacggggagatcgtcgtctacaacgacgcgggtcagatcgacttcggg
ttgctgcaggaacgccgcggccgctaccagacccatcgcggctctgctcgccgtgacgag
ccgttcgccgacgacgttccggtccggttcctggcgttcgatttggtgcagctcggcggt
gtctcgctgctgcgtgagccgtatgacgagcgccggcggcagttgaccgcgctgccgatg
ccggatccgtaccgggtggaggtggtgcgcgggttcaccttcaccgatctggccgcggat
cgccggaccccgtggcacctgctcgaccacgtgaaagccagtggtcacgagggattggtc
gcgaagctccgcaccgccgcctacacccccgggcgccgcagcaacgcctggctgaaacat
ccgctgatccagacggccgaggtgatcgtctgcggttaccggcccgggcagggacggctg
gacgggctgatgggcgggctcctgctcggtgcccacgacccggacaccggcgacctggtc
tacatcggtgacgtcggcaccggcttcaccgaagccgaacgagcccgcttgcaggcccgg
ctcgacgccctcgagcggaagcggcatcccttcgctgagacaccacccagggccgacacc
gcgagggcgcagtgggtggagccggagctggtgggcgaggtggtgttccggcagttcacc
cgcggcgccggtcgcctgcggcataccgcgtggcggggtctgcgcgatgacaaggagcct
gccgacgtcctggccccgcaacgacgcgagcccgcctctgcccgaaagaccacgcgtgag
caggcacaaggtgatccggtggccgaggatcagcccacggcttcaccgggggcgaagatc
accgtccaggccggtgaccggagactcgttctgtccaatttggacaaacctttgtatccg
gacgggttcacgaagggggaggtgatcaactactactcgcgtatcgccccggtgctgctg
ccgcatctggccgggcgtccggtgacgttcatccgcttcccggacggtgtcggcggggag
cagttcttcgagaagaacgtcccgcacggcgcgccggcgtggctgccgaccgcccggatc
gctcgcagcggcagccggggctcgacagagccggtcacgtacgcgttgctggacgagctc
gccgcggtggtgtgggcggcgaacatggccgcactcgaactccacgttccacaatggacc
gtcggcgacgacggcacgcgccgcccgccggaccggctggtgttcgacctcgaccccggg
ccgggaacctcgatcgtgcactgctgccgcgtcgccgaacgactgcacgaagccctgacg
gacaacgggttgacgccgctggcgaagacgtccggctcgaagggcatgcagctctactgc
gccatcaccaccgacgaccctgcggccccgtcggcgtacgcgaagaaactcgcccaacgc
ctggcccgggagacaccgggcaaggtgaccgccgtgatggccaaagcccagcgcaccggg
cgggtgttcatcgactggtcccagaacaaccccgccaagaccaccgtcgccccgtactcg
ctgcgcggccgcgaccaccccaccgtctccaccccggtcacctgggacgaagtccgcgcc
tgccgccgcccggcacagctggtgttcaccgccgacgacgtcctcgaccgcgtcaacgaa
cacggcgacctcctcgccggactcgacgtcacacgcgctccattgccctccggctga
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