Aspergillus oryzae: AO090102000515
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Entry
AO090102000515 CDS
T01018
Name
(RefSeq) unnamed protein product; 5'-3' exonuclease XRN1/KEM1/SEP1 involved in DNA strand exchange and mRNA turnover
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
aor
Aspergillus oryzae
Pathway
aor03008
Ribosome biogenesis in eukaryotes
aor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aor00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
AO090102000515
09123 Folding, sorting and degradation
03018 RNA degradation
AO090102000515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aor03019
]
AO090102000515
03009 Ribosome biogenesis [BR:
aor03009
]
AO090102000515
03016 Transfer RNA biogenesis [BR:
aor03016
]
AO090102000515
03036 Chromosome and associated proteins [BR:
aor03036
]
AO090102000515
Messenger RNA biogenesis [BR:
aor03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
AO090102000515
mRNA degradation factors
5'-3' decay
5' exonucleases
AO090102000515
Ribosome biogenesis [BR:
aor03009
]
Eukaryotic type
Pre-60S particles
RNases
AO090102000515
Transfer RNA biogenesis [BR:
aor03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
AO090102000515
Chromosome and associated proteins [BR:
aor03036
]
Eukaryotic type
Gene silencing
piRNA pathway
AO090102000515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
5994721
NCBI-ProteinID:
XP_001822676
UniProt:
Q2UA72
LinkDB
All DBs
Position
4:3122863..3127140
Genome browser
AA seq
1409 aa
AA seq
DB search
MGVPKFFRWLSERYPAISMLIAENRIPEFDNLYLDMNGIIHNCTHKDSDSPTFRMTEDKM
FIAIFNYIEHLYGKIKPKKLFFMAIDGVAPRAKMNQQRARRFRTALDAEVAKEKAISQGI
EMPKEDAFDSNCITPGTEFMAKLTEQLKYFINKKISEDKDWQGVEIVLSGHEVPGEGEHK
IMEYIRHAKAQPGYDPNVRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGRQVQKKPKE
LEHQNFYLLHLCMVREYLELEFQELERTDVLSFSFDMERVIDDFILMAFFVGNDFLPNLP
NLHINEGALAFLFKVYKEILPKMGGYINEQGVINMERLGMLLDGLSDVEFRFFEAEYSGE
RWIQAKKNGGENNSESQERPKSFTITPAQKNLLKEVKKYVLNRPEKAADPQPLDFPPTLP
ARDRKFLEQLADDLRLPWTTEPDEHGERFIRFKLPAKQNDDSDDEEDEEASMAVQRIIRK
YENAKVQELSAEDAQKAAEKKYEEKFQEWKSKYYTGKFEWGLDNHEEMRKLTENYVQGLQ
WVLYYYYRGIASWPWFFQYHYAPMISDVKKGLKADTNFQLGQPFRPYDQLMGVLPDRSKK
IVPAAYRDLMTSPESPIVDFYPRDFELDMNGKKMEWEAVVKIPFIEEKRLLDALKTKEHL
LTPEEKARNGFGASLKFTYSPDVQFIYPSSLPGVFPDIPNCHCIENIFDLPTMDGLEPYI
GLVDGAQLGASALAGFPSLKTLPHVGQLGFHGVCVFQQESRNESMVITVLDPGSRSSSLL
AKQKLGQRVFVGYPFLQEAYVVRVSDELFDYIKPEGEEHVVNIPHTEAQIEQWKKKADKI
EGTYSRRLGTIIGPVEAMVHVQLLKGLLKTDEGATVKEFADIPGQETDYALQLVVGEVIN
PDERFIERDALPIEEEFPEGSRAFFLGDFNYGRPMHITGHSNGKVNGLIAAVKGREPEFG
KERARDAERFCPYMPSYAIARSLQLNPLVLAKITSAFSVDVEGQRVNLGLNLKFEARKQK
VLGYSRRGDSGWEFSPKAVELLQQYMIKFPEFIAGIQRNPQGDRYKPTDFYPEETALLKV
KEIREWLKSIEAKNFERVPLDAEQLDSDIVKLIEQDADQLIQNQPAMQAKKVGGVPRSAL
LRPSDVEQRLGNQTFRLGDRVVYAQDSGKVPIATRGTVVGLTRTSRALLLDVVFDVSFMS
GTTLGDRCSPFRGQTVLSSSVLNVSYRQLLATTRAASSQQSQQSPLTVAGYGAPSGPGGQ
GQLKEASAPPPLSGSYRGAVAGMGNGRGNGFSQRGRGGRGGRGASNGVGPQTTLPFRPHF
NGGEQQTDGPHRGGRGRGRGGMPRTRGGYVAVDPNPDAGVVKHNPNFQAHNYSQVPPPKN
LNNRGGRGGRGNPRGSHRGRGATAGNNQA
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttcctaagttcttccgctggctgagcgagcggtatcctgcgatctcaatgctg
atcgcagagaatcggatacctgaattcgacaacctatacctcgacatgaatggtattatt
cataattgtacgcacaaagatagcgactcccctacttttcgcatgaccgaagataagatg
tttatcgccatatttaattatatcgagcatctgtacggcaaaatcaaaccaaagaagctc
ttctttatggcgattgatggtgttgcccctcgggccaagatgaaccaacagcgcgcacga
cgattcaggacagctttggatgctgaggttgcgaaggagaaagccatcagtcaaggaatt
gagatgcccaaggaggatgcttttgacagcaattgcattaccccgggcacggaattcatg
gctaaattgacagaacaattaaaatactttatcaacaagaagatatcggaagataaagat
tggcaaggagtcgaaatcgtactgtcaggtcatgaagtaccaggagaaggtgaacataag
atcatggaatacatccggcatgcgaaagcacagccaggctatgaccccaatgttcgtcac
tgtctttatggtctcgacgctgatttgatcatgttgggacttctcagtcatgaccctcac
ttctgtcttcttcgtgaggaagtgacctttgggcgtcaagtccagaaaaagcctaaagaa
ctcgaacatcagaacttttaccttttgcatttgtgcatggttagagagtacttagaattg
gagtttcaggagttggaacggacagacgttttgagcttttcttttgacatggaacgggtt
attgacgacttcattttgatggcgttctttgttggaaacgactttctacctaacctgcct
aatctgcatatcaacgaaggtgcattggcgttcttgtttaaagtctacaaagagatcttg
ccaaagatgggcgggtatatcaacgaacagggcgttattaacatggagcgtttgggtatg
cttcttgacggcctgagcgatgttgaattccgcttttttgaagctgaatactcaggcgag
cgatggatccaggccaagaaaaatggtggagaaaacaactccgaatcccaagaaagacct
aaaagttttacaattaccccggcacagaagaatcttctgaaagaggtcaagaaatatgtg
cttaaccgacctgaaaaggcggcagacccgcaacctcttgacttccctcccacactgcct
gctcgagatcgcaagttcttggaacaacttgcagatgaccttcgactgccgtggactact
gagccagacgaacatggggaacgatttattaggtttaagcttccagcaaaacaaaacgac
gatagcgacgatgaggaagacgaagaggcatctatggctgttcaacgtatcatccgaaag
tatgagaatgcaaaagttcaagagctctccgctgaagatgcccagaaagctgctgagaag
aaatatgaggaaaagtttcaagaatggaaaagcaagtattatacaggaaagtttgaatgg
ggtttggacaatcatgaagaaatgaggaaattaacggagaattatgtgcaaggcctccag
tgggttttgtactattattacagaggcatagcgtcctggccttggttcttccagtatcac
tatgccccaatgatttctgatgttaaaaaaggcctgaaggcagatacgaatttccagctt
ggtcaacccttcagaccttacgatcagcttatgggtgttttacccgatcgaagcaaaaaa
atcgtccctgctgcctaccgagacttgatgacttcaccagaatctcctattgtcgatttc
taccctcgtgattttgagttggatatgaatgggaagaagatggagtgggaggcagttgtc
aaaatcccattcatcgaggagaaacgtttgttggatgctctaaaaacgaaagagcatcta
ttaaccccagaagaaaaggcacggaatggcttcggtgctagccttaagttcacgtactcg
cccgatgtacagtttatctacccatcatcactccctggtgtttttccagatatccctaat
tgccattgcatcgagaatatcttcgacttgcctactatggatggtcttgagccctacatt
ggtttggttgatggggctcaactcggagcatcagcattagcaggtttccccagtttgaag
actttacctcacgttggccaactaggcttccatggggtgtgcgtcttccagcaagagagc
cgcaacgaaagcatggtcatcactgtacttgatcctggaagcaggtcaagtagcttgttg
gctaagcagaagctcggacagcgtgtttttgtgggttatccattcctacaagaagcatac
gttgtccgtgtttccgatgagcttttcgattacataaagccggaaggggaggagcatgtt
gtaaacattccccatactgaggctcaaatcgagcaatggaagaagaaagccgacaagatc
gaaggaacatatagtaggcggcttggcacgattattggccctgttgaggcgatggtacac
gttcagctactgaaggggttgctcaagaccgatgaaggtgctacagtgaaagagttcgca
gacatcccgggacaagaaaccgattacgctctccagctcgtcgttggtgaagtgatcaat
cccgatgaacgtttcattgaacgtgatgctctacctatcgaagaagaattccccgagggc
tctcgtgcatttttcctgggagacttcaattacggcagacccatgcatatcacagggcat
agcaatggcaaagtgaacggattaatcgctgcagttaagggccgagaacccgagtttgga
aaggagcgtgctagggatgccgagaggttttgtccttacatgccctcttacgcgattgct
cgcagcctgcagttgaatcccttagtattggcgaaaatcacttccgccttctctgtggat
gtagagggtcagcgtgttaatctgggtctcaacctgaagttcgaggcgaggaaacagaag
gttctgggttattcacgtcgtggagactccggctgggagtttagtcccaaggcagttgaa
ttgctccagcaatacatgatcaaattccctgaattcatcgctggtatccagcgtaaccct
cagggcgatcgctataagccaacggatttctatcctgaagagaccgcccttctaaaagtc
aaggagattcgtgagtggctcaaatctatcgaggccaagaatttcgagagagttcctcta
gatgctgaacagctcgattccgatattgtcaagttgatcgagcaggatgcggatcaatta
attcaaaaccagcccgcgatgcaagcaaagaaagtagggggtgttccacgaagtgccctt
ctcaggccatctgatgtagagcagagactcgggaaccaaacgttcagacttggtgaccgc
gttgtctatgcccaggactccggaaaagtgcccatagccactcgcggaacggtcgttggt
ctcacccggacgtcgcgggcccttctcctggatgttgttttcgacgtttcgttcatgagc
ggaacgaccctgggtgaccgatgctctccattccggggacaaacagtcctgtcatcttct
gtccttaatgtttcataccgacagttactcgccacaacccgagcagccagcagccagcaa
agtcaacaatcgcctttgactgttgcgggctatggcgctccttctgggcccggtggacag
gggcagctgaaagaagcttcagcccctccacctctcagtggctcctaccgaggtgctgta
gcaggtatgggcaacggtcgcggcaatggtttctctcaaagaggccggggtggtcgtggc
gggcggggcgcctctaacggtgttgggccgcagacaaccctacccttccgaccacatttt
aacggtggagaacagcaaactgatgggccacatcgcggaggtagagggagaggccgcggt
ggcatgccccgtactcgaggaggatacgtcgctgtggatcccaatccggatgcgggtgta
gtgaagcacaaccccaacttccaggcacataattactcacaagtccccccacccaagaac
ttgaacaaccgtggcggacgtggtggccgaggaaaccctcgagggagccatcgcggcaga
ggtgctactgcagggaataatcaggcttga
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integrated database retrieval system
