Anaeromyxobacter paludicola: AMPC_20840
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Entry
AMPC_20840 CDS
T08525
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
apau
Anaeromyxobacter paludicola
Pathway
apau03030
DNA replication
apau03410
Base excision repair
apau03420
Nucleotide excision repair
apau03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
apau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMPC_20840 (ligA)
03410 Base excision repair
AMPC_20840 (ligA)
03420 Nucleotide excision repair
AMPC_20840 (ligA)
03430 Mismatch repair
AMPC_20840 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
apau03032
]
AMPC_20840 (ligA)
03400 DNA repair and recombination proteins [BR:
apau03400
]
AMPC_20840 (ligA)
Enzymes [BR:
apau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AMPC_20840 (ligA)
DNA replication proteins [BR:
apau03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AMPC_20840 (ligA)
DNA repair and recombination proteins [BR:
apau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AMPC_20840 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AMPC_20840 (ligA)
MMR (mismatch excision repair)
DNA ligase
AMPC_20840 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AMPC_20840 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BDG08971
LinkDB
All DBs
Position
complement(2337028..2339112)
Genome browser
AA seq
694 aa
AA seq
DB search
MPTPGSAESRRAAELKERLRAADHAYYVLDQPVLSDAEYDRLMRELAALEAEHPELRDPD
SPTQRVSGAPSARFDRVVHREPMLSLGNVQTDEELDELDARVHRLLELPEGVKVAYVCEP
KLDGLSAELVYEDGVFVSGSTRGDGVNGEDVTRNLRTIGGLGANRGVPQRLEGSPPRRLE
VRGEVLLQKKHFEAMNQLILRQGGEPFANPRNAAAGSLRQLDWRVTATRPLSFIAYEALT
PETEPGGSADRRAEAKPEQKIAPWRTHWDKLADLARFGFDTNPENARCSGIEEVKRFRDL
MERRRFELPYDTDGVVVKVDDLDWRRRLGAASKFPRWAAAFKYPPQEEATRVRTIWASVG
RTGILTPVVEVDPVQLSGATVSRATLHNEDEMRRKDIRQGDWVLIRRAGEVIPEVVKPLP
ERRTGEETFFEFPSRCPVCGAAVVREEGEKVYRCTGAACPAQLVGRLRHFAQRRAMDVDG
LGDKLCAQLVQSGLVKDFADLYAVTREQWQGLERMAEKSAQNIVDALERSKQTTLRRLVF
GLGIPQVGEATAATLARHFGSLERFLAASEEELLGVRDIGPESAREIRAWTAEPQNVRVV
ERLLAAGVAPAPEQVDARGPFAGKTVVLTGGLASLSRDDAKAEIERRGGKVSGSVSKKTH
LVVAGEDAGSKLEKARGLGVKVIGEEEFLALLKE
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
gtgccgacccctgggagcgccgagtcccgccgcgccgccgagctgaaggagcgcctccgc
gccgcggaccacgcctactacgtcctcgaccagccggtcctctcggacgccgagtacgat
cggctcatgcgcgagctcgccgcgctcgaggcggagcacccggagctgcgcgaccccgac
tcgcccacgcagcgcgtctccggcgcgccgtccgcgaggttcgaccgggtggtgcaccgc
gagccgatgctctcgctcgggaacgtgcagaccgacgaggagctcgacgagctcgacgcc
cgcgtgcaccggctgctcgagctgcccgagggggtgaaggtcgcctacgtctgcgagccg
aagctcgacgggctctcggcggagctggtctacgaggacggggtcttcgtctccggctcc
acccgcggcgacggcgtgaacggcgaggacgtcacccgcaacctgcgcaccatcggcggc
ctcggcgcgaaccggggcgtgccgcagcggctcgaggggagcccgccgcgccggctcgag
gtgcgcggcgaggtgctcctccagaagaagcacttcgaggcgatgaaccagctcatcctg
cggcaggggggcgagccgttcgcgaacccgcgcaacgccgccgcgggctcgctccggcag
ctcgactggcgcgtcaccgccacccggccgctctccttcatcgcctacgaggcgctcacg
ccggagacggagccgggcggctccgccgatcggcgggcggaggcgaagccggagcagaag
atcgcgccgtggaggacgcactgggacaagctcgccgacctggcgcgcttcggcttcgac
accaaccccgagaacgcgcgctgctccgggatcgaggaggtgaagcggttccgcgatctc
atggagcggcgccgcttcgagctcccctacgacaccgacggcgtggtggtgaaggtggac
gacctcgactggcgccggcggctcggcgcggcgagcaagttcccgcgctgggcggcggcc
ttcaagtacccgccgcaggaggaggccacgcgcgtccgcaccatctgggcctcggtgggg
cgcaccggcatcctcacgccggtggtggaggtggacccggtgcagctctcgggcgcgacc
gtctcgcgcgccaccctccacaacgaggacgagatgcgccgcaaggacatccgccagggc
gactgggtgctcatccggcgcgccggcgaggtgatcccggaggtggtgaagccgctcccc
gagcggcgcaccggcgaggagaccttcttcgagttcccgtcccgctgcccggtctgcggc
gcggcggtggtgcgcgaggagggggagaaggtgtaccgctgcaccggcgccgcgtgcccg
gcgcagctcgtgggccggctgcgccacttcgcgcagcggcgcgccatggacgtggacggc
ctcggcgacaagctctgcgcgcagctcgtgcagtcggggctggtgaaggacttcgccgac
ctctacgccgtcacccgcgagcagtggcaggggctcgagcggatggcggagaagagcgcc
cagaacatcgtggacgcgctcgagcgctcgaagcagaccacgctgcgccggctggtcttc
gggctcggcatcccgcaggtcggcgaggcgaccgcggccaccctggcgcgccacttcggc
agcctcgagcggttcctggccgcctcggaggaggagctgctcggggtccgcgacatcggc
cccgagagcgcgcgcgagatccgggcctggaccgccgagccccagaacgtgcgcgtcgtc
gagcggctcctcgccgccggcgtggcgcccgcgccggagcaggtggacgcgcgcggcccg
ttcgccggcaagacggtggtgctcaccggcgggctcgcgagcctctcgcgcgacgacgcc
aaggcggagatcgagcggcgcggcggcaaggtgtccggctcggtctcgaagaagacccac
ctggtggtggccggcgaggacgcgggctcgaagctcgagaaggcccgtggcctcggcgtg
aaggtgatcggcgaggaggagttcctcgcgctcttgaaggagtga
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