Acyrthosiphon pisum (pea aphid): 100164462
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Entry
100164462 CDS
T01076
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
api
Acyrthosiphon pisum (pea aphid)
Pathway
api03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
api00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
100164462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
api03400
]
100164462
Enzymes [BR:
api01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100164462
DNA repair and recombination proteins [BR:
api03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
100164462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
mRNA_cap_enzyme
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
100164462
NCBI-ProteinID:
XP_001946729
APHIDBASE:
ACYPI005480
UniProt:
A0A8R1W2J9
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Position
A1:41154190..41162633
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AA seq
889 aa
AA seq
DB search
MASTISKPCNKIPFELFCRVCEDIYNAKNEKKVLILEKFISKCRGSIEKSDNLNIEDTFY
PVLRLLLPVSDKQRGAYGVKEAALGKLYVKILCLAKDSPDAQKLLNFRVPKVSGSTAGDF
AETLYWVIRSRFEDNGSMSIADINQILDEIAMKHATNESREVEQILQSMLLKLSANEQKW
LIRLLLKDMRLGIAHTKILKAYHDDANDLYDVCNDLKKVCKMLNNPSVVLHEISVNLFEP
FCPMLSQRCEITDDSKINKMVKNEDLFVDIKLDGERFQLHWSKEKNIFKYFSRRGNDYTD
TYGCNDVNGILSPVLAKQFKSDVKNCILDGEMMCYNTKYKSFSTKAMNIDVKKLRIGNTH
QPCFCVFDIVYYNDRVITNLPLEKRLDILNTIFEPLEGIFVHTTRHKARKNELMKYLNDA
IDNHEEGIVVKDPLSIYKPNSRNAGWYKIKPEYTDGALIELDLLIIGGFYGEGKKRGVVS
HFLMGLLEKDGESFKCSAISRVSSGFSTEELADLSRKLSSHWQRVYPGKMPPNIEWGKEK
PDLWIEPESSVIVQVKATEIMTSNIFKSKITLRFPRIERVRYDKPWHDCLTVEEFESIIK
QTEGKLYTSHTDETNTSGKIKKTRVTLTVDKKFLGPNIRDIEFINNMFEDKEFCVLNDSE
TLNKSEIEKKILEYGGRVVQNPGNDTFCVLANNIKHIRAHAIKLSGKHSIISTKWILSCF
TDNEFLNWTPENVLFLSKEHQLLMDEKFDQYGDSYTELATVETLRRAMDRVELDDDLVNT
EVDAFLEFQNELFNEEQCFKIFEKCQVYFDDLNLENLPVRNFHTNTVLEMLIFKFNGGTV
CKNIDNNTTHVVIHSSSKNNVNKYQTMKRDRNQAFEIVDENWITQKIKW
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atggcttctacaatcagtaaaccttgcaacaaaataccatttgaattattttgtcgagtg
tgtgaagacatttataatgctaaaaatgaaaagaaagtcctcattctagaaaaattcata
agtaaatgtcgagggtcaattgagaaaagtgacaacttaaatatagaagatacattttat
ccagtgttaagattgctgttacctgtatcagacaaacaaaggggtgcgtacggcgttaaa
gaagctgctttaggaaagttgtatgtaaaaatactatgccttgcaaaagacagtccagat
gctcaaaagcttttgaatttcagggtgccaaaagtttctgggtccacagctggagacttc
gctgaaactctgtattgggttataagaagtcgatttgaagacaatggttcaatgagtata
gctgatattaaccaaatattggatgaaatagccatgaaacatgctaccaatgaatcaagg
gaagtggaacaaatattacaatcaatgctattaaagctcagtgctaatgagcaaaaatgg
ttaattcgtctactattaaaagatatgcgcttgggtattgcgcatacaaaaatattaaag
gcatatcatgatgatgccaacgatttatatgatgtttgcaatgatttaaaaaaagtatgc
aaaatgcttaataacccatcggtggttttgcatgaaatatctgttaatttatttgaacct
ttttgcccaatgctaagccaacgctgtgaaattactgatgacagtaaaataaataagatg
gttaagaatgaagatttatttgttgacattaaattggatggtgaaagatttcaacttcat
tggtccaaagaaaaaaatatttttaaatatttttccagaagaggcaatgattatacagat
acatatggttgtaatgatgttaatggtattctgagcccagtattagcaaaacaatttaaa
tccgatgtaaagaattgcatcttagatggtgagatgatgtgttataacactaagtacaaa
tcattttctacaaaagccatgaatattgatgtaaaaaaattaagaatagggaatacacac
caaccatgcttttgtgtatttgatattgtctactataatgatcgagtaattacaaacctt
ccattggaaaaacgattagatattttaaatacaatatttgaaccattagaagggattttt
gtacatactacgcggcataaagcaagaaaaaatgaattaatgaaatatctcaatgatgca
attgataaccatgaagagggcattgtagtcaaagatccattatcaatttataagcccaat
tcacgaaatgcaggatggtataaaattaaaccagaatatacagatggtgcactcattgaa
ttagaccttttaattattggcggattctatggtgaaggtaaaaaacgaggtgtggttagc
catttccttatgggtcttttagaaaaagatggtgaatcatttaaatgttctgctatcagt
cgagttagttcagggttttcaacagaagaactagccgatttatcaaggaaattgtcttct
cattggcaaagagtttaccctggaaagatgccaccaaacattgagtggggtaaagaaaag
ccagatctttggattgaacctgaatcatcagttattgtacaggtaaaagcaacagaaatt
atgacaagcaacatttttaaaagtaaaataacattacgttttccacgaatcgaaagagtt
cgttacgacaaaccgtggcatgactgtctgaccgttgaggaatttgagtctataatcaag
caaacagagggaaagttgtatacttcgcatactgatgaaacaaatacctcaggaaaaatt
aaaaaaacccgtgtgacattaaccgttgacaaaaaatttctgggcccaaatataagagat
atcgaatttattaataatatgtttgaagacaaagaattctgtgtcctcaacgatagtgaa
actttgaacaagagtgaaatcgagaaaaagattcttgaatatggtggtcgagttgtacaa
aaccctggcaatgatactttttgtgttcttgccaacaatatcaaacatataagggcgcat
gcaataaaattatcaggcaaacatagtataataagtacaaaatggatactgtcatgtttt
actgacaatgaatttcttaactggacacccgaaaacgttttgtttttatccaaggaacat
cagctattaatggatgaaaaatttgatcagtatggtgacagttatacagaattagctact
gttgaaacattacgccgtgcaatggatcgagttgaactagatgatgatttggtcaacaca
gaagttgatgcttttttggaatttcaaaacgaactctttaatgaagaacaatgcttcaaa
atttttgaaaaatgccaagtctattttgatgatttaaatttagaaaatttgcctgtcaga
aatttccacacaaacacagtgttagaaatgctgatatttaaatttaatggaggcacagtc
tgtaaaaatattgataacaatactactcatgttgtaattcattcaagtagtaaaaataac
gttaataaatatcaaacgatgaaaagagatcggaaccaagcatttgaaattgttgatgag
aactggattacacaaaaaataaaatggtag
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